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[184214_s_at]

Description Y17G9B.8 /REP_DB=WormBase Gene ID /WP=CE24187 /TR=Q9N576 /GB=AAF60449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_high_8_8 > 24      6grp_highest_nonorm > 71      6grp_total > 46      4grp_total > 39      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 476
1 2 3 4 range
A 622.1
(3)
P 		194.8
(-2.5)
P 		157.4
(-3)
A 		242.6
(-1.9)
P 		465
B 493.9
(3)
P 		227.8
(-1.6)
P 		146.1
(-3)
P 		230.4
(-1.5)
P 		348
C 467.6
(3)
P 		186.3
(-3)
P 		210.1
(-2.5)
P 		245.3
(-1.7)
P 		281
avr 527.9
(3) 		203
(-2.5) 		171.2
(-3) 		239.4
(-1.9) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 398.7
(0.8)
P 		499.7
(3)
P 		227.3
(-3)
P 		434.4
(1.6)
P 		240.5
(-2.7)
P 		444.9
(1.8)
P 		272
B 459.7
(3)
P 		394.3
(0.6)
P 		294.7
(-3)
P 		386.2
(0.3)
P 		315.2
(-2.3)
P 		359.1
(-0.7)
P 		165
C 290
(-2)
P 		505
(3)
P 		399.9
(0.6)
P 		428.5
(1.2)
P 		245.3
(-3)
P 		363.8
(-0.3)
P 		260
avr 382.8
(0.5) 		466.3
(3) 		307.3
(-1.8) 		416.4
(1.5) 		267
(-3) 		389.3
(0.7) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 226.5
(3)
P 		42.3
(-2.8)
P 		41.1
(-2.8)
A 		35.5
(-3)
P 		191
B 157.5
(3)
P 		56.3
(-1.9)
P 		33.9
(-3)
P 		49.1
(-2.3)
P 		124
C 154.8
(3)
P 		53.6
(-2.4)
P 		73.2
(-1.3)
P 		41.4
(-3)
P 		113
avr 179.6
(3) 		50.7
(-2.6) 		49.4
(-2.7) 		42
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 73.5
(-1.9)
P 		177.7
(3)
P 		49.5
(-3)
P 		110.2
(-0.2)
P 		72.6
(-1.9)
P 		108.3
(-0.2)
P 		128
B 160
(3)
P 		131.2
(1)
P 		71.6
(-3)
P 		102.3
(-0.9)
P 		128.1
(0.8)
P 		133.9
(1.2)
P 		88
C 107.5
(-0.7)
P 		154.1
(3)
P 		101.8
(-1.2)
P 		86.2
(-2.5)
P 		79.4
(-3)
P 		121.8
(0.4)
P 		75
avr 113.7
(-0) 		154.3
(3) 		74.3
(-3) 		99.6
(-1.1) 		93.4
(-1.6) 		121.3
(0.5) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184214_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11052
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.8 NCBI
Target Description Y17G9B.8 /REP_DB=WormBase Gene ID /WP=CE24187 /TR=Q9N576 /GB=AAF60449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068234(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068234 NCBI Caenorhabditis elegans Y17G9B.8 (Y17G9B.8) mRNA, complete cds. 10/11 None
SNAP00000043798 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4757305:4758696:-1 11/11 None
GENEFINDER00000043816 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4757305:4758696:-1 11/11 None
Y17G9B.8 ENSEMBL cdna:known chromosome:CEL140:IV:4757243:4758696:-1 gene:Y17G9B.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4757310-4758702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.8
Entrez Gene 177246 Entrez gene
SwissProt Q9N576 EMBL-EBI
WormBase CE34607 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590998_AT similar to CG30390-PA cfa
CANINE:1589749_X_AT similar to CG30390-PA cfa
CANINE_2:CFA.6751.1.A1_A_AT similar to CG30390-PA cfa
CANINE_2:CFA.6751.1.A1_X_AT similar to CG30390-PA cfa
CANINE_2:CFAAFFX.26204.1.S1_S_AT similar to CG30390-PA cfa
DROSOPHILA_2:1623090_AT dm
CHICKEN:GGA.5792.2.S1_S_AT similar to hypothetical protein BC011981 gga
CHICKEN:GGAAFFX.11999.1.S1_S_AT similar to hypothetical protein BC011981 gga
CHICKEN:GGA.5792.3.A1_AT Similar to hypothetical protein BC011981 gga
HG-U133A_2:48117_AT hypothetical protein BC011981 hs
HG-U133_PLUS_2:48117_AT hypothetical protein BC011981 hs
HG-U133A:48117_AT hypothetical protein BC011981 hs
HG-U95B:48117_AT hypothetical protein BC011981 hs
HG-U133_PLUS_2:221822_AT hypothetical protein BC011981 hs
HG-U133A_2:221822_AT hypothetical protein BC011981 hs
HG-U133A:221822_AT hypothetical protein BC011981 hs
HU35KSUBA:AA437153_AT hypothetical protein BC011981 hs
HU35KSUBD:RC_AA447192_AT hypothetical protein BC011981 hs
U133_X3P:HS.110407.0.A1_3P_X_AT hypothetical protein BC011981 hs
U133_X3P:HS.110407.0.A1_3P_S_AT hypothetical protein BC011981 hs
U133_X3P:HS.110407.0.A1_3P_AT hypothetical protein BC011981 hs
U133_X3P:4861894_3P_S_AT hypothetical protein BC011981 hs
U133_X3P:221822_3P_AT hypothetical protein BC011981 hs
HG-U95C:65124_AT hypothetical protein BC011981 hs
MU11KSUBB:Z31061_S_AT RIKEN cDNA 1700023O11 gene mm
MG-U74AV2:104593_AT RIKEN cDNA 1700023O11 gene mm
MOE430A:1451167_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430A_2:1451167_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430_2:1451167_AT RIKEN cDNA 1700023O11 gene mm
MOE430A:1437592_X_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430A_2:1437592_X_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430_2:1437592_X_AT RIKEN cDNA 1700023O11 gene mm
MOE430A:1451166_A_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430A_2:1451166_A_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430_2:1451166_A_AT RIKEN cDNA 1700023O11 gene mm
MOE430B:1430605_AT RIKEN cDNA 1700023O11 gene mm
MOUSE430_2:1430605_AT RIKEN cDNA 1700023O11 gene mm
MG-U74BV2:164482_I_AT RIKEN cDNA 1700023O11 gene (1700023O11Rik), mRNA mm
MU19KSUBA:TC21826_AT RIKEN cDNA 1700023O11 gene (1700023O11Rik), mRNA mm
MU19KSUBB:TC32191_AT RIKEN cDNA 1700023O11 gene (1700023O11Rik), mRNA mm
MU19KSUBC:TC38314_AT RIKEN cDNA 1700023O11 gene (1700023O11Rik), mRNA mm
RAE230A:1389676_AT similar to hypothetical protein BC011981 (predicted) rn
RAT230_2:1389676_AT similar to hypothetical protein BC011981 (predicted) rn
RAE230B:1395038_AT Similar to hypothetical protein BC011981 (predicted) rn
RAT230_2:1395038_AT Similar to hypothetical protein BC011981 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_500635 Y17G9B.8 [Caenorhabditis elegans] gb|AAF60449.2| Hypothetical protein Y17G9B.8 [Caenorhabditis elegans] 1.0E-172
blast NP_500635 Y17G9B.8 [Caenorhabditis elegans] gb|AAF60449.2| Hypothetical protein Y17G9B.8 [Caenorhabditis elegans] 1.0E-143
blast CAE58581 Hypothetical protein CBG01747 [Caenorhabditis briggsae] 1.0E-121
blast CAE58581 Hypothetical protein CBG01747 [Caenorhabditis briggsae] 1.0E-118
blast CAE58581 Hypothetical protein CBG01747 [Caenorhabditis briggsae] 1.0E-115
blast NP_083615 hypothetical protein LOC75565 [Mus musculus] gb|AAH26784.1| RIKEN cDNA 1700023O11 [Mus musculus] 2.0E-38
blast NP_083615 hypothetical protein LOC75565 [Mus musculus] gb|AAH26784.1| RIKEN cDNA 1700023O11 [Mus musculus] 8.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR010750 EMBL-EBI Protein of unknown function DUF1325 7.2E-69
Pfam IPR010750 EMBL-EBI Protein of unknown function DUF1325 7.2E-69
Pfam IPR010750 EMBL-EBI Protein of unknown function DUF1325 7.2E-69
Sequence
Target Sequence 
>C. ELEGANS:184214_S_AT
atcgctcccaaatggccggagacatcagtcggagagatttaatggaactgatcaaggttc
gcggcgaccttcttccattatggaccagccatgacacacaatttcctggagaatatgttg
gagctattgcaccacaggatggctcgaaactaggcgacggagattcagtggcggcattca
gtaaagacggaaactggattcttgctgatattgtcacatgtcactctaactcgcgatatg
agtgtcgagacgttgatgatgacaagaagaagttgacagttttcgcgagaagccatttgt
tacccctcccaaaatggaaagcgaatcctgcatcagacaagcatgcacttttcgagaaaa
atgcgattgtgttggcgttgtatccacaaaccacttgcttctacaaaggaatagttcact
ccccgccagcagattttcgagaaccatatcaagtagcgttcgaagacgacagctatgcat
caggattctgccctccaatgccggttgctcagaaatacgtggttgccttccgagaagttg
cagggctcactgcatcaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCTCCCAAATGGCCGGAGACAT 242 37 170 Antisense
CTGATCAAGGTTCGCGGCGACCTTC 531 239 217 Antisense
GACCTTCTTCCATTATGGACCAGCC 435 383 235 Antisense
GGACCAGCCATGACACACAATTTCC 30 523 251 Antisense
GCTATTGCACCACAGGATGGCTCGA 705 303 292 Antisense
AGGCGACGGAGATTCAGTGGCGGCA 126 55 321 Antisense
TATTGTCACATGTCACTCTAACTCG 111 665 378 Antisense
TATCCACAAACCACTTGCTTCTACA 123 659 550 Antisense
AGCTATGCATCAGGATTCTGCCCTC 201 79 640 Antisense
AATACGTGGTTGCCTTCCGAGAAGT 295 173 683 Antisense
GTTGCAGGGCTCACTGCATCAACTG 611 439 706 Antisense
Sequence Source Affymetrix Proprietary Database