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[184211_at]

Description F16B4.10 /REP_DB=WormBase Gene ID /WP=CE17020 /TR=O44636 /GB=AAB94241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 10      6grp_cgc > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 35.4
(-2.7)
A 		80.9
(-0.6)
A 		27.8
(-3)
A 		159.3
(3)
M 		132
B 38.6
(-3)
A 		44.3
(-2.6)
A 		79.9
(0.2)
A 		115.3
(3)
P 		77
C 44.2
(-1.8)
A 		48.2
(-1.6)
A 		14.2
(-3)
A 		162.2
(3)
P 		148
avr 39.4
(-3) 		57.8
(-2) 		40.6
(-2.9) 		145.6
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 68.5
(3)
A 		37.7
(-0.4)
A 		26.7
(-1.7)
A 		14.6
(-3)
A 		44.5
(0.3)
A 		20.8
(-2.3)
A 		54
B 35.7
(3)
A 		17.4
(-0.3)
A 		2.5
(-3)
A 		19.2
(0)
A 		26.8
(1.4)
A 		9.2
(-1.8)
A 		33
C 2.3
(-3)
A 		53
(3)
A 		38
(1.2)
A 		11.3
(-1.9)
A 		26.9
(-0.1)
A 		39.1
(1.4)
A 		51
avr 35.5
(2.9) 		36
(3) 		22.4
(-0.9) 		15
(-3) 		32.7
(2.1) 		23
(-0.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.9
(-0.9)
A 		17.6
(0.9)
A 		7.3
(-3)
A 		23.3
(3)
M 		16
B 12.3
(-2.4)
A 		10.9
(-3)
A 		18.5
(0.3)
A 		24.6
(3)
P 		14
C 14.6
(-0.4)
A 		13.9
(-0.6)
A 		4.9
(-3)
A 		27.4
(3)
P 		23
avr 13.3
(-1.8) 		14.1
(-1.4) 		10.2
(-3) 		25.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.6
(2.5)
A 		13.4
(3)
A 		5.8
(-1.7)
A 		3.7
(-3)
A 		13.4
(3)
A 		5.1
(-2.1)
A 		10
B 12.4
(3)
A 		5.8
(-0.4)
A 		0.6
(-3)
A 		5.1
(-0.7)
A 		10.9
(2.2)
A 		3.4
(-1.6)
A 		12
C 0.8
(-3)
A 		16.2
(3)
A 		9.7
(0.5)
A 		2.3
(-2.4)
A 		8.7
(0.1)
A 		13.1
(1.8)
A 		15
avr 8.6
(0.6) 		11.8
(3) 		5.4
(-1.7) 		3.7
(-3) 		11
(2.4) 		7.2
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14820
Sequence Type Exemplar sequence
Representative Public ID F16B4.10 NCBI
Target Description F16B4.10 /REP_DB=WormBase Gene ID /WP=CE17020 /TR=O44636 /GB=AAB94241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071055 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-41) (srbc-41) mRNA, complete cds. 11/11 None
F16B4.10 ENSEMBL cdna:known chromosome:CEL140:V:1612632:1614655:-1 gene:F16B4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004026 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1612631-1614655(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-41
Ensembl F16B4.10
Entrez Gene 184561 Entrez gene
SwissProt O44636 EMBL-EBI
WormBase CE35277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94241 Hypothetical protein F16B4.10 [Caenorhabditis elegans] ref|NP_503456.2| Serpentine Receptor, class BC (class B-like) family member (srbc-41) [Caenorhabditis elegans] 1.0E-138
blast CAE62508 Hypothetical protein CBG06613 [Caenorhabditis briggsae] 1.0E-84
blast CAE74165 Hypothetical protein CBG21838 [Caenorhabditis briggsae] 6.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.9E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503456.2 6 5-27,48-68,78-100,121-143,176-195,208-230
F16B4.10 6 5-27,48-68,78-100,121-143,176-195,208-230
Sequence
Target Sequence 
>C. ELEGANS:184211_AT
gacttttggcaacttacctacctattaaatatcacgtggctcgacctcgaatttcaaacc
tactattctacattcctccatttatatttctcattgtcgaggactttgttattttcataa
tttgtggaaaaaatttaaaacatatcccagacagttgtacaacgttcccatgcaccttga
atacttgtgcatataattggtggaccacttataagtctgttatatttcctgtgatcatat
tcttcacaataattctttgcattaagctaatgcttttttcaaaaactctgcaaaactctg
gagttacgaaaagagccaatcgactagctcttctcgacgcttttttgattttcttcttcg
actttgttccatcgtttgtggctcacgagtttcccaattctccgttgatagcctacacga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTTGGCAACTTACCTACCTAT 549 369 374 Antisense
TTAAATATCACGTGGCTCGACCTCG 41 683 398 Antisense
GCTCGACCTCGAATTTCAAACCTAC 91 295 412 Antisense
TCAAACCTACTATTCTACATTCCTC 530 629 427 Antisense
CATTCCTCCATTTATATTTCTCATT 526 217 444 Antisense
GACAGTTGTACAACGTTCCCATGCA 234 369 523 Antisense
GTTCCCATGCACCTTGAATACTTGT 668 441 537 Antisense
GAGCCAATCGACTAGCTCTTCTCGA 337 385 686 Antisense
TCTTCTCGACGCTTTTTTGATTTTC 527 617 702 Antisense
GACTTTGTTCCATCGTTTGTGGCTC 82 373 733 Antisense
ATTCTCCGTTGATAGCCTACACGAC 318 11 770 Antisense
Sequence Source Affymetrix Proprietary Database