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[184210_at]

Description F49D11.7 /REP_DB=WormBase Gene ID /WP=CE17081 /TR=O44726 /GB=AAB96706.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 32.7
(-0.4)
A 		10.3
(-2.5)
A 		5.4
(-3)
A 		69
(3)
A 		64
B 30.6
(3)
A 		5.5
(-2.5)
A 		3.2
(-3)
A 		29.5
(2.8)
A 		27
C 32.6
(-1.1)
A 		9.5
(-2.5)
A 		2.2
(-3)
A 		98.7
(3)
A 		97
avr 32
(-0.3) 		8.4
(-2.5) 		3.6
(-3) 		65.7
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 37.2
(-0.5)
A 		7.4
(-2.7)
A 		8.3
(-2.7)
A 		3.7
(-3)
A 		29.1
(-1.1)
A 		83.4
(3)
A 		80
B 7.9
(-2.7)
A 		4.7
(-3)
A 		4.2
(-3)
A 		5.6
(-2.9)
A 		42.9
(-0)
A 		82.9
(3)
P 		79
C 3.5
(-3)
A 		8.8
(-2.5)
A 		24.7
(-1.2)
A 		7.9
(-2.6)
A 		40.3
(0.2)
M 		72.7
(3)
P 		69
avr 16.2
(-2.1) 		7
(-2.9) 		12.4
(-2.5) 		5.7
(-3) 		37.4
(-0.4) 		79.7
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.9
(3)
A 		2.2
(-2.5)
A 		1.4
(-3)
A 		10.1
(2)
A 		11
B 9.8
(3)
A 		1.3
(-2.6)
A 		0.7
(-3)
A 		6.3
(0.7)
A 		9
C 10.8
(0.8)
A 		2.7
(-2.3)
A 		0.8
(-3)
A 		16.6
(3)
A 		16
avr 10.8
(2.9) 		2.1
(-2.3) 		1
(-3) 		11
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.9
(-1.1)
A 		2.6
(-2.5)
A 		1.8
(-2.7)
A 		0.9
(-3)
A 		8.8
(-0.6)
A 		20.3
(3)
A 		19
B 2.8
(-2.6)
A 		1.6
(-2.9)
A 		1
(-3)
A 		1.5
(-2.9)
A 		17.4
(0.3)
A 		30.9
(3)
P 		30
C 1.3
(-3)
A 		2.7
(-2.6)
A 		6.3
(-1.7)
A 		1.6
(-2.9)
A 		13
(0.1)
M 		24.3
(3)
P 		23
avr 3.7
(-2.4) 		2.3
(-2.7) 		3
(-2.6) 		1.3
(-3) 		13.1
(-0) 		25.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2295
Sequence Type Exemplar sequence
Representative Public ID F49D11.7 NCBI
Target Description F49D11.7 /REP_DB=WormBase Gene ID /WP=CE17081 /TR=O44726 /GB=AAB96706.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060447 NCBI Caenorhabditis elegans F49D11.7 (F49D11.7) mRNA, complete cds. 11/11 None
SNAP00000015041 ENSEMBL cdna:SNAP chromosome:CEL140:I:10931706:10932024:-1 11/11 None
GENEFINDER00000015064 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10931881:10932024:-1 10/11 None
F49D11.7 ENSEMBL cdna:known chromosome:CEL140:I:10931706:10932024:-1 gene:F49D11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10931636-10931955(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49D11.7
Entrez Gene 186036 Entrez gene
SwissProt O44726 EMBL-EBI
WormBase CE17081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96706 Hypothetical protein F49D11.7 [Caenorhabditis elegans] ref|NP_492848.1| F49D11.7 [Caenorhabditis elegans] 8.0E-12
blast AAB96706 Hypothetical protein F49D11.7 [Caenorhabditis elegans] ref|NP_492848.1| F49D11.7 [Caenorhabditis elegans] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184210_AT
tggaccaggatatgctccatattatggttcaccatatggagacccatgttatggtccggc
ctatggtccagcctatgggcctacttatgttcaaccaattgctcaaccagtttatgtaca
tgatacacgtgcggaagaagcctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCAGGATATGCTCCATATTAT 70 547 18 Antisense
TATGCTCCATATTATGGTTCACCAT 612 657 28 Antisense
ATGGTTCACCATATGGAGACCCATG 606 51 41 Antisense
GGAGACCCATGTTATGGTCCGGCCT 272 519 55 Antisense
CCATGTTATGGTCCGGCCTATGGTC 540 261 61 Antisense
GGCCTATGGTCCAGCCTATGGGCCT 16 543 75 Antisense
GCCTATGGGCCTACTTATGTTCAAC 666 281 88 Antisense
GGGCCTACTTATGTTCAACCAATTG 574 491 94 Antisense
GTTCAACCAATTGCTCAACCAGTTT 568 445 106 Antisense
AATTGCTCAACCAGTTTATGTACAT 237 179 114 Antisense
GATACACGTGCGGAAGAAGCCTGTT 639 423 139 Antisense
Sequence Source Affymetrix Proprietary Database