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[184209_s_at]

Description C56C10.7 /REP_DB=WormBase Gene ID /WP=CE02572 /TR=Q18884 /GB=AAA68775.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 82      6grp_total > 88      4grp_total > 30      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 385.6
(3)
P 		235.4
(-2.4)
P 		218.6
(-3)
P 		226.8
(-2.7)
P 		167
B 348.3
(3)
P 		295.8
(-0.6)
P 		261.2
(-3)
P 		343.1
(2.6)
P 		87
C 396.3
(3)
P 		213.8
(-3)
P 		215.7
(-2.9)
P 		386.2
(2.7)
P 		183
avr 376.7
(3) 		248.3
(-2.3) 		231.8
(-3) 		318.7
(0.6) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 261.3
(-3)
P 		348.2
(-0.3)
P 		374.5
(0.5)
P 		404
(1.4)
P 		321.3
(-1.2)
P 		457.9
(3)
P 		197
B 300.9
(-3)
P 		361.7
(0.1)
P 		373.9
(0.7)
P 		360.7
(0)
P 		387.1
(1.3)
P 		420.3
(3)
P 		119
C 426.8
(1.9)
P 		337.6
(-0.9)
P 		313.7
(-1.6)
P 		268.8
(-3)
P 		462.8
(3)
P 		419.5
(1.7)
P 		194
avr 329.7
(-3) 		349.2
(-1.9) 		354
(-1.6) 		344.5
(-2.1) 		390.4
(0.5) 		432.6
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 140.4
(3)
P 		51.1
(-2)
P 		57.2
(-1.7)
P 		33.2
(-3)
P 		107
B 111.1
(3)
P 		73.1
(-1.5)
P 		60.5
(-3)
P 		73.1
(-1.5)
P 		51
C 131.2
(3)
P 		61.5
(-3)
P 		75.2
(-1.8)
P 		65.1
(-2.7)
P 		70
avr 127.6
(3) 		61.9
(-2.6) 		64.3
(-2.4) 		57.1
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 48.2
(-3)
P 		123.8
(3)
P 		81.6
(-0.3)
P 		102.5
(1.3)
P 		97
(0.9)
P 		111.5
(2)
P 		76
B 104.7
(-1.7)
P 		120.4
(-0.3)
P 		90.8
(-3)
P 		95.5
(-2.6)
P 		157.3
(3)
P 		156.7
(2.9)
P 		67
C 158.2
(3)
P 		103
(-0.2)
P 		79.8
(-1.5)
P 		54.1
(-3)
P 		149.7
(2.5)
P 		140.4
(2)
P 		104
avr 103.7
(-0.7) 		115.7
(0.6) 		84.1
(-3) 		84
(-3) 		134.7
(2.8) 		136.2
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184209_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4371
Sequence Type Exemplar sequence
Representative Public ID C56C10.7 NCBI
Target Description C56C10.7 /REP_DB=WormBase Gene ID /WP=CE02572 /TR=Q18884 /GB=AAA68775.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171009(11), NM_171851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171009 NCBI Caenorhabditis elegans C56C10.7a (C56C10.7) mRNA, complete cds. 11/11 None
NM_171851 NCBI Caenorhabditis elegans C56C10.7b (C56C10.7) mRNA, complete cds. 11/11 None
SNAP00000022063 ENSEMBL cdna:SNAP chromosome:CEL140:II:6584520:6587423:-1 11/11 None
GENEFINDER00000022087 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6584520:6587423:-1 11/11 None
C56C10.7a ENSEMBL cdna:known chromosome:CEL140:II:6584387:6587423:-1 gene:C56C10.7 11/11 None
C56C10.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:6584410:6587427:-1 gene:C56C10.7 11/11 None
C56C10.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:6584426:6587514:-1 gene:C56C10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6584516-6587420(-) 100.0 100.0
Public Domain and Genome References
Ensembl C56C10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27235 Hypothetical protein C56C10.7a [Caenorhabditis elegans] ref|NP_741009.1| C56C10.7a [Caenorhabditis elegans] 0.0
blast T15846 hypothetical protein C56C10.7 - Caenorhabditis elegans 0.0
blast AAL27236 Hypothetical protein C56C10.7b [Caenorhabditis elegans] ref|NP_741010.1| C56C10.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010378 EMBL-EBI Protein of unknown function DUF974 1.0E-126
Pfam IPR010378 EMBL-EBI Protein of unknown function DUF974 6.4E-86
Pfam IPR010378 EMBL-EBI Protein of unknown function DUF974 3.4E-37
Pfam IPR010378 EMBL-EBI Protein of unknown function DUF974 1.0E-126
Pfam IPR010378 EMBL-EBI Protein of unknown function DUF974 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184209_S_AT
aagacattcgtcagtttttgttctgtctaacaccagccgatgttcataacacacttggat
ataaagatttgacaagtattggaaagttggatatgtcatggagaacgagcatgggagaga
agggacggctccaaactagtgctcttcaaagaattgcacctggatatggagatgttcgac
tttctgtcgagaagacgccagcatgcgtagatgttcagaaaccttttgaagtgtcttgca
gactttacaattgctcagaaagagcacttgatctacaacttcgacttgaacaaccatcga
atcgtcatcttgttttctgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACATTCGTCAGTTTTTGTTCTG 597 153 716 Antisense
TTTTGTTCTGTCTAACACCAGCCGA 61 679 731 Antisense
CACCAGCCGATGTTCATAACACACT 664 201 746 Antisense
GAAGGGACGGCTCCAAACTAGTGCT 629 333 834 Antisense
ATATGGAGATGTTCGACTTTCTGTC 59 23 879 Antisense
GACTTTCTGTCGAGAAGACGCCAGC 554 371 893 Antisense
CGCCAGCATGCGTAGATGTTCAGAA 11 259 911 Antisense
GAAACCTTTTGAAGTGTCTTGCAGA 272 359 933 Antisense
GAGCACTTGATCTACAACTTCGACT 23 391 977 Antisense
GACTTGAACAACCATCGAATCGTCA 27 371 998 Antisense
AATCGTCATCTTGTTTTCTGTTCAC 227 169 1015 Antisense
Sequence Source Affymetrix Proprietary Database