[Home] | [Total List]

[184208_at]

Description Y17G7B.14 /REP_DB=WormBase Gene ID /WP=CE19048 /TR=Q9XXI0 /GB=CAA19461.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 47      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 198.2
(3)
P 		90.5
(-1.5)
A 		55.6
(-3)
P 		86.4
(-1.7)
P 		143
B 266.4
(3)
P 		74.6
(-2.1)
P 		39.8
(-3)
A 		52.5
(-2.7)
P 		227
C 218.7
(3)
P 		63.7
(-2.7)
P 		56
(-3)
P 		71.6
(-2.4)
P 		163
avr 227.8
(3) 		76.3
(-2.1) 		50.5
(-3) 		70.2
(-2.3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 108.8
(1.1)
P 		76.6
(-1.8)
P 		106.8
(0.9)
P 		129.7
(3)
P 		95.6
(-0.1)
P 		63.7
(-3)
P 		66
B 102.8
(3)
P 		89.5
(1.6)
P 		47.6
(-3)
P 		75.2
(0)
P 		93.3
(2)
P 		68.2
(-0.8)
P 		55
C 119.6
(2.7)
P 		117.4
(2.6)
P 		57.5
(-2.3)
P 		122.9
(3)
P 		70.9
(-1.2)
P 		49.1
(-3)
P 		74
avr 110.4
(3) 		94.5
(1.1) 		70.6
(-1.8) 		109.3
(2.9) 		86.6
(0.1) 		60.3
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 72.1
(3)
P 		19.6
(-2.3)
A 		14.5
(-2.8)
P 		12.6
(-3)
P 		60
B 85
(3)
P 		18.4
(-2.3)
P 		9.2
(-3)
A 		11.2
(-2.8)
P 		76
C 72.4
(3)
P 		18.3
(-2.4)
P 		19.5
(-2.3)
P 		12.1
(-3)
P 		60
avr 76.5
(3) 		18.8
(-2.4) 		14.4
(-2.8) 		12
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.1
(-1.4)
P 		27.2
(1)
P 		23.3
(-0.3)
P 		32.9
(3)
P 		28.9
(1.6)
P 		15.5
(-3)
P 		17
B 35.8
(2.5)
P 		29.8
(1.2)
P 		11.6
(-3)
P 		19.9
(-1.1)
P 		37.9
(3)
P 		25.4
(0.1)
P 		26
C 44.3
(3)
P 		35.8
(1.3)
P 		14.6
(-3)
P 		24.7
(-1)
P 		22.9
(-1.3)
P 		16.4
(-2.6)
P 		30
avr 33.4
(3) 		30.9
(2.1) 		16.5
(-3) 		25.8
(0.3) 		29.9
(1.8) 		19.1
(-2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3843
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.14 NCBI
Target Description Y17G7B.14 /REP_DB=WormBase Gene ID /WP=CE19048 /TR=Q9XXI0 /GB=CAA19461.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064167 NCBI Caenorhabditis elegans Y17G7B.14 (Y17G7B.14) mRNA, complete cds. 11/11 None
SNAP00000030326 ENSEMBL cdna:SNAP chromosome:CEL140:II:12064988:12067471:1 9/11 None
GENEFINDER00000030408 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12064988:12067471:1 11/11 None
Y17G7B.14 ENSEMBL cdna:known chromosome:CEL140:II:12064988:12067471:1 gene:Y17G7B.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12064984-12067468(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.14
Entrez Gene 189457 Entrez gene
SwissProt Q9XXI0 EMBL-EBI
WormBase CE19048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19461 Hypothetical protein Y17G7B.14 [Caenorhabditis elegans] ref|NP_496568.1| Y17G7B.14 [Caenorhabditis elegans] 0.0
blast CAE57951 Hypothetical protein CBG01010 [Caenorhabditis briggsae] 1.0E-107
blast CAA19461 Hypothetical protein Y17G7B.14 [Caenorhabditis elegans] ref|NP_496568.1| Y17G7B.14 [Caenorhabditis elegans] 2.0E-90
blast CAA19457 Hypothetical protein Y17G7B.11 [Caenorhabditis elegans] ref|NP_496567.2| Y17G7B.11 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.4E-42
Pfam IPR000698 EMBL-EBI Arrestin 2.6E-52
Pfam IPR000698 EMBL-EBI Arrestin 1.2E-37
Pfam IPR000698 EMBL-EBI Arrestin 1.5E-13
Sequence
Target Sequence 
>C. ELEGANS:184208_AT
gatcgtatcttcttgcaagcattctggattattttctaacaaagaggttaaagttaagat
ctccatcccaaaatccggatacatcccaggagagaccatccaagtatctgctctaattca
aaatcacacgaagaagcctatatattctataaaagcaaaattggagcagcacgtgcatta
tcaggctcaacaagagaattctcatctatttccagaagaacattgtcataaacattgtga
gcataaaactgctcaaaccacaatgtcgaaagttgagaagagttgtcacgtggaattttg
ctcaaatagccaaataaatgtgccacttgttctgccgaatcagttggttcctagttttcg
aacaggaattattgaagtagactattgtattattgtggatatcggagagaataagaaatt
gagatgtgaacttccgattactgttggaacaattcccattggagtattcacaagaccaat
tgcctattctattacggaagctcctcctaaatatgaaaacttcagtcaaattgtagaaga
ttctcaggcaagtgctccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTATCTTCTTGCAAGCATTCT 114 419 516 Antisense
TAAGATCTCCATCCCAAAATCCGGA 444 637 570 Antisense
GATACATCCCAGGAGAGACCATCCA 501 423 593 Antisense
AGACCATCCAAGTATCTGCTCTAAT 308 69 608 Antisense
GCAGCACGTGCATTATCAGGCTCAA 600 313 681 Antisense
AAAACTGCTCAAACCACAATGTCGA 518 131 760 Antisense
TAAATGTGCCACTTGTTCTGCCGAA 544 641 830 Antisense
TCTGCCGAATCAGTTGGTTCCTAGT 68 609 846 Antisense
GACCAATTGCCTATTCTATTACGGA 490 381 989 Antisense
CTATTACGGAAGCTCCTCCTAAATA 670 213 1004 Antisense
AAGATTCTCAGGCAAGTGCTCCACC 5 157 1052 Antisense
Sequence Source Affymetrix Proprietary Database