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[184206_at]

Description Y43F11A.5 /REP_DB=WormBase Gene ID /WP=CE24283 /TR=Q9U2G8 /GB=CAB55043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 31.7
(-3)
A 		112.1
(2.3)
A 		84.9
(0.5)
M 		123.5
(3)
A 		92
B 22.9
(-3)
A 		74.5
(0.6)
A 		28.3
(-2.6)
A 		108.9
(3)
A 		86
C 19.8
(-3)
A 		99
(0.6)
A 		102.4
(0.8)
P 		151.3
(3)
A 		132
avr 24.8
(-3) 		95.2
(1.1) 		71.9
(-0.3) 		127.9
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 17.3
(-3)
A 		33
(-2.5)
A 		67.1
(-1.5)
A 		102.2
(-0.5)
A 		147.4
(0.9)
P 		218.4
(3)
P 		201
B 25.7
(-3)
A 		49.4
(-2.1)
A 		57.1
(-1.8)
P 		89
(-0.7)
A 		155.5
(1.8)
P 		189.1
(3)
P 		163
C 44.2
(-2.7)
A 		34.7
(-3)
A 		58
(-2.2)
A 		80.6
(-1.3)
A 		180.7
(2.2)
P 		201.6
(3)
P 		167
avr 29.1
(-3) 		39
(-2.7) 		60.7
(-1.9) 		90.6
(-0.9) 		161.2
(1.6) 		203
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 11.6
(-3)
A 		24.3
(3)
A 		22.2
(2)
M 		18.1
(0.1)
A 		13
B 7.3
(-2.7)
A 		18.4
(1.3)
A 		6.6
(-3)
A 		23.2
(3)
A 		17
C 6.5
(-3)
A 		28.5
(1.5)
A 		35.7
(3)
P 		25.5
(0.9)
A 		29
avr 8.5
(-3) 		23.7
(3) 		21.5
(2.1) 		22.3
(2.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 3.2
(-3)
A 		11.7
(-2)
A 		14.6
(-1.6)
A 		25.9
(-0.3)
A 		44.5
(2)
P 		53.2
(3)
P 		50
B 8.9
(-3)
A 		16.5
(-2.3)
A 		13.9
(-2.5)
P 		23.6
(-1.6)
A 		63.2
(2.3)
P 		70.5
(3)
P 		62
C 16.4
(-2.4)
A 		10.6
(-3)
A 		14.8
(-2.6)
A 		16.2
(-2.4)
A 		58.5
(2.1)
P 		67.5
(3)
P 		57
avr 9.5
(-3) 		12.9
(-2.6) 		14.4
(-2.5) 		21.9
(-1.6) 		55.4
(2.1) 		63.7
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2630
Sequence Type Exemplar sequence
Representative Public ID Y43F11A.5 NCBI
Target Description Y43F11A.5 /REP_DB=WormBase Gene ID /WP=CE24283 /TR=Q9U2G8 /GB=CAB55043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064178 NCBI Caenorhabditis elegans Y43F11A.5 (Y43F11A.5) mRNA, complete cds. 11/11 None
SNAP00000033624 ENSEMBL cdna:SNAP chromosome:CEL140:II:12122950:12131393:-1 11/11 None
GENEFINDER00000033629 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12123687:12130848:-1 11/11 None
Y43F11A.5 ENSEMBL cdna:known chromosome:CEL140:II:12123569:12130848:-1 gene:Y43F11A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12123565-12130845(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F11A.5
Entrez Gene 3565594 Entrez gene
SwissProt Q9U2G8 EMBL-EBI
WormBase CE36413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55043 Hypothetical protein Y43F11A.5 [Caenorhabditis elegans] ref|NP_496579.2| Y43F11A.5 [Caenorhabditis elegans] 0.0
blast NP_500539 F15E6.1 [Caenorhabditis elegans] gb|AAB92063.1| Hypothetical protein F15E6.1 [Caenorhabditis elegans] 3.0E-25
blast CAB63382 Hypothetical protein Y51H4A.12 [Caenorhabditis elegans] ref|NP_502971.1| Y51H4A.12 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 1.2E-41
Pfam IPR006570 EMBL-EBI SPK 3.4E-24
Sequence
Target Sequence 
>C. ELEGANS:184206_AT
tcagaaactcagcagcaggagcccccacaggatgatatacaattcctttatgaaggaaat
caagcgaatattactggaaatgagcaaccagaagcatgtgctcaagctcaattgtattat
ggtccagaacctggagtttcagtgcaaaaaaagcaacaaaaaaaaccctatttccagcaa
atcccggctccagcacagctcaccaccgaatccagcaatgaaaccgcattatccacaatc
agtgatctatttccatctgtaattgctgaaacttcaccatggacttcgtctcgtttgtca
cgtgttaattatgagcttttcgagaacgaattgttcgcatttctcgccgaaaagtcgaaa
atggcgacaggacccgtgattttgacgccagtgctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAAACTCAGCAGCAGGAGCCCC 672 621 1303 Antisense
GGAGCCCCCACAGGATGATATACAA 96 523 1320 Antisense
AGAAGCATGTGCTCAAGCTCAATTG 104 75 1392 Antisense
CTCACCACCGAATCCAGCAATGAAA 25 229 1501 Antisense
ATGAAACCGCATTATCCACAATCAG 65 45 1520 Antisense
GATCTATTTCCATCTGTAATTGCTG 615 419 1546 Antisense
TGAAACTTCACCATGGACTTCGTCT 115 573 1569 Antisense
CTTCGTCTCGTTTGTCACGTGTTAA 165 219 1586 Antisense
AATTGTTCGCATTTCTCGCCGAAAA 349 179 1631 Antisense
GAAAATGGCGACAGGACCCGTGATT 494 353 1659 Antisense
CGTGATTTTGACGCCAGTGCTCGAA 219 245 1677 Antisense
Sequence Source Affymetrix Proprietary Database