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[184205_at]

Description Y52B11B.1 /REP_DB=WormBase Gene ID /WP=CE19220 /TR=Q9XWM7 /GB=CAA21626.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 5.2
(-3)
A 		503.4
(2.9)
P 		514.1
(3)
P 		18.5
(-2.8)
A 		509
B 11.3
(-3)
A 		521.6
(3)
P 		441.1
(2.1)
P 		22.4
(-2.9)
A 		510
C 30
(-2.7)
A 		439.4
(2.9)
P 		449.9
(3)
P 		7.5
(-3)
A 		442
avr 15.5
(-3) 		488.1
(3) 		468.4
(2.7) 		16.1
(-3) 		473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2035
1 2 3 4 5 6 range
A 18.3
(-3)
A 		525.5
(-1.3)
P 		504.8
(-1.3)
P 		1674.2
(2.7)
P 		1762.5
(3)
P 		357.5
(-1.8)
P 		1744
B 18.3
(-3)
A 		487.1
(-1.6)
P 		479.2
(-1.6)
P 		1445.2
(1.2)
P 		2040.1
(3)
P 		437.3
(-1.8)
P 		2022
C 4.7
(-3)
A 		499.3
(-1.5)
P 		419.9
(-1.7)
P 		1953.1
(3)
P 		1737.8
(2.3)
P 		443.1
(-1.6)
P 		1948
avr 13.8
(-3) 		504
(-1.4) 		468
(-1.5) 		1690.8
(2.5) 		1846.8
(3) 		412.6
(-1.7) 		1833
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 1.9
(-3)
A 		109.3
(1.9)
P 		134.4
(3)
P 		2.7
(-3)
A 		133
B 3.6
(-3)
A 		128.8
(3)
P 		102.2
(1.7)
P 		4.8
(-2.9)
A 		125
C 9.9
(-2.7)
A 		126.3
(1.8)
P 		156.8
(3)
P 		1.3
(-3)
A 		156
avr 5.1
(-2.9) 		121.5
(2.6) 		131.1
(3) 		2.9
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 3.4
(-3)
A 		186.9
(-0.9)
P 		109.9
(-1.8)
P 		424.6
(1.8)
P 		531.9
(3)
P 		87
(-2.1)
P 		529
B 6.4
(-3)
A 		162.1
(-1.9)
P 		116.4
(-2.2)
P 		382.8
(-0.3)
P 		828.9
(3)
P 		163.1
(-1.9)
P 		823
C 1.7
(-3)
A 		152.3
(-1.4)
P 		106.9
(-1.9)
P 		392.8
(1.2)
P 		562.3
(3)
P 		148.3
(-1.4)
P 		561
avr 3.8
(-3) 		167.1
(-1.5) 		111.1
(-2) 		400.1
(0.7) 		641
(3) 		132.8
(-1.8) 		637
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2223
Sequence Type Exemplar sequence
Representative Public ID Y52B11B.1 NCBI
Target Description Y52B11B.1 /REP_DB=WormBase Gene ID /WP=CE19220 /TR=Q9XWM7 /GB=CAA21626.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060463 NCBI Caenorhabditis elegans Y52B11B.1 (Y52B11B.1) mRNA, complete cds. 11/11 None
SNAP00000017923 ENSEMBL cdna:SNAP chromosome:CEL140:I:11121036:11132219:1 11/11 None
GENEFINDER00000017924 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11131886:11132183:1 11/11 None
Y52B11B.1 ENSEMBL cdna:known chromosome:CEL140:I:11131886:11132250:1 gene:Y52B11B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11131816-11132150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11B.1
Entrez Gene 173008 Entrez gene
SwissProt Q9XWM7 EMBL-EBI
WormBase CE19220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21626 Hypothetical protein Y52B11B.1 [Caenorhabditis elegans] ref|NP_492864.1| Y52B11B.1 [Caenorhabditis elegans] 2.0E-38
blast CAA21626 Hypothetical protein Y52B11B.1 [Caenorhabditis elegans] ref|NP_492864.1| Y52B11B.1 [Caenorhabditis elegans] 3.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492864.1 1 5-22
Y52B11B.1 1 5-22
SNAP00000017923 1 17-36
GENEFINDER00000017924 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:184205_AT
atgcgttattatttccttattctcctaatcatatcaaccatccttatcactttaaccgta
accgcgccagacagaaaatccaaaaactcggaaaaatccgacgacgaagaattatcaaat
cttcaaattcaagtcaatgctccagatggaaagggttttgtgcattcagcgctgccaatt
gaagcccgagctcacggagcccgtttgcacggtggacaatcgaaaccaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTTATTATTTCCTTATTCTCC 46 41 13 Antisense
ATTTCCTTATTCTCCTAATCATATC 591 17 23 Antisense
TTCTCCTAATCATATCAACCATCCT 31 695 32 Antisense
ATCATATCAACCATCCTTATCACTT 192 31 40 Antisense
GTAACCGCGCCAGACAGAAAATCCA 531 461 70 Antisense
AAATCCGACGACGAAGAATTATCAA 18 119 106 Antisense
GCTCCAGATGGAAAGGGTTTTGTGC 291 297 151 Antisense
AAGGGTTTTGTGCATTCAGCGCTGC 553 159 163 Antisense
CATTCAGCGCTGCCAATTGAAGCCC 553 215 175 Antisense
GAGCCCGTTTGCACGGTGGACAATC 557 365 209 Antisense
GCACGGTGGACAATCGAAACCAAGT 337 315 219 Antisense
Sequence Source Affymetrix Proprietary Database