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[184202_at]

Description C35D10.2 /REP_DB=WormBase Gene ID /WP=CE01196 /TR=Q18488 /GB=AAA62558.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 14.8
(-3)
A 		17.4
(-2.8)
A 		51.4
(-0.5)
A 		102.4
(3)
A 		88
B 4.9
(-3)
A 		72.9
(3)
A 		7.4
(-2.8)
A 		51.5
(1.1)
A 		68
C 10.5
(-3)
A 		57.1
(1.7)
A 		15.2
(-2.5)
A 		69.7
(3)
A 		59
avr 10.1
(-3) 		49.1
(0.6) 		24.7
(-1.6) 		74.5
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 815
1 2 3 4 5 6 range
A 11.6
(-2.9)
A 		10.6
(-3)
A 		4.6
(-3)
A 		180.7
(-1.6)
P 		401.5
(0.2)
P 		751.8
(3)
P 		747
B 26
(-2.8)
A 		5.5
(-3)
A 		7.3
(-3)
A 		134.4
(-1.9)
P 		433.7
(0.8)
P 		687.4
(3)
P 		682
C 11
(-3)
A 		19.7
(-2.9)
A 		66
(-2.6)
A 		103.2
(-2.3)
P 		364.5
(-0.4)
P 		819.5
(3)
P 		809
avr 16.2
(-3) 		11.9
(-3) 		26
(-2.9) 		139.4
(-2) 		399.9
(0.1) 		752.9
(3) 		741
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.4
(-2.1)
A 		3.8
(-3)
A 		13.4
(2.1)
A 		15
(3)
A 		11
B 1.6
(-3)
A 		18
(3)
A 		1.7
(-3)
A 		11
(0.4)
A 		16
C 3.5
(-3)
A 		16.4
(3)
A 		5.3
(-2.2)
A 		11.7
(0.8)
A 		13
avr 3.5
(-3) 		12.7
(3) 		6.8
(-0.8) 		12.6
(2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3.8
(-2.9)
A 		1
(-3)
A 		45.8
(-1.5)
P 		121.1
(1)
P 		183
(3)
P 		182
B 9
(-2.8)
A 		1.8
(-3)
A 		1.8
(-3)
A 		35.6
(-2.2)
P 		176.2
(1.1)
P 		256.3
(3)
P 		255
C 4.1
(-3)
A 		6
(-3)
A 		16.8
(-2.7)
A 		20.8
(-2.6)
P 		118
(-0.5)
P 		274.3
(3)
P 		270
avr 5.1
(-3) 		3.9
(-3) 		6.5
(-2.9) 		34.1
(-2.2) 		138.4
(0.4) 		237.9
(3) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7681
Sequence Type Exemplar sequence
Representative Public ID C35D10.2 NCBI
Target Description C35D10.2 /REP_DB=WormBase Gene ID /WP=CE01196 /TR=Q18488 /GB=AAA62558.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065616 NCBI Caenorhabditis elegans C35D10.2 (C35D10.2) mRNA, complete cds. 11/11 None
SNAP00000029551 ENSEMBL cdna:SNAP chromosome:CEL140:III:4870801:4871975:1 11/11 None
GENEFINDER00000029558 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4870801:4871975:1 11/11 None
C35D10.2 ENSEMBL cdna:known chromosome:CEL140:III:4870744:4872010:1 gene:C35D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4870800-4871975(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.2
Entrez Gene 175649 Entrez gene
SwissProt Q18488 EMBL-EBI
WormBase CE01196 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587267_AT similar to RGS19-interacting protein 1 (GAIP C-terminus interacting protein GIPC) (RGS-GAIP interacting protein) (Synectin) (SemaF cytoplasmic domain associated protein 1) (SEMCAP-1) cfa
CANINE_2:CFA.14987.1.A1_AT similar to RGS19-interacting protein 1 (GAIP C-terminus interacting protein GIPC) (RGS-GAIP interacting protein) (Synectin) (SemaF cytoplasmic domain associated protein 1) (SEMCAP-1) cfa
CANINE_2:CFAAFFX.24979.1.S1_AT similar to RGS19-interacting protein 1 (GAIP C-terminus interacting protein GIPC) (RGS-GAIP interacting protein) (Synectin) (SemaF cytoplasmic domain associated protein 1) (SEMCAP-1) cfa
DROSOPHILA_2:1638267_S_AT dm
DROSGENOME1:152855_AT dm
HG-U133_PLUS_2:207525_S_AT GIPC PDZ domain containing family, member 1 hs
HG-U133A:207525_S_AT GIPC PDZ domain containing family, member 1 hs
HG-FOCUS:207525_S_AT GIPC PDZ domain containing family, member 1 hs
HG-U133A_2:207525_S_AT GIPC PDZ domain containing family, member 1 hs
HU35KSUBA:RC_AA149940_AT GIPC PDZ domain containing family, member 1 hs
HU35KSUBA:AA320369_S_AT GIPC PDZ domain containing family, member 1 hs
U133_X3P:G5031714_3P_A_AT GIPC PDZ domain containing family, member 1 hs
HG-U95AV2:35756_AT GIPC PDZ domain containing family, member 1 hs
HG-U95E:79554_AT GIPC PDZ domain containing family, member 1 hs
HU35KSUBB:RC_T77788_AT GIPC PDZ domain containing family, member 1 hs
MG-U74AV2:101683_AT GIPC PDZ domain containing family, member 1 mm
MG-U74AV2:93732_F_AT GIPC PDZ domain containing family, member 1 mm
MG-U74AV2:93733_R_AT GIPC PDZ domain containing family, member 1 mm
MOE430A:1422763_AT GIPC PDZ domain containing family, member 1 mm
MOUSE430A_2:1422763_AT GIPC PDZ domain containing family, member 1 mm
MOUSE430_2:1422763_AT GIPC PDZ domain containing family, member 1 mm
MU19KSUBC:TC39729_AT Regulator of G-protein signaling 19 interacting protein 1, mRNA (cDNA clone MGC:6562 IMAGE:2811749) mm
RAE230A:1368065_AT regulator of G-protein signaling 19 interacting protein 1 rn
RAT230_2:1368065_AT regulator of G-protein signaling 19 interacting protein 1 rn
RN-U34:AF032120_S_AT regulator of G-protein signaling 19 interacting protein 1 rn
RG-U34A:AF032120_S_AT regulator of G-protein signaling 19 interacting protein 1 rn
RG-U34A:AF089817_I_AT regulator of G-protein signaling 19 interacting protein 1 rn
RG-U34A:RC_AI639271_F_AT regulator of G-protein signaling 19 interacting protein 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498017 C35D10.2 [Caenorhabditis elegans] gb|AAA62558.1| Hypothetical protein C35D10.2 [Caenorhabditis elegans] 0.0
blast CAA92600 Hypothetical protein F44D12.4 [Caenorhabditis elegans] ref|NP_501810.2| F44D12.4 [Caenorhabditis elegans] 1.0E-169
blast CAE71137 Hypothetical protein CBG17992 [Caenorhabditis briggsae] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:184202_AT
gacaatcacggacaacggactcgggaatgcatttatcaaggtcataagcccagattcggt
gtttgatcgtatgcgtccagccactcaagttggtcaactcattgaggcggtcaatggaga
atgtgtgctcgggaaaaggcattaccaagttgcccgaattttgaaaaatgttcgtcgcgg
cgaggaatgcgtggttcgattgattgctccaaagactgctgatccaggaaccatgaagac
gactggaaaaactggcggaggtctggcaaaaggaaccattcgtttcaaatcggaaggcgg
atttgctgttgaggatgttcaagatcagatgatccaagctgagatgtgcggaaagctcaa
tgagatattcgaccaatacttgggagttcaagatgatcagctggccatgagaatctggga
aactgcttcaaactgcgagacgcttttgcaactcagtgaagccatcaaagagtcggagct
ctcaatgttcgatttcccggatggaatggttttcgatatgtggggaatcatcggtgattt
gaagcgggagcaacgtgagaagaagccatccccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATCACGGACAACGGACTCGGG 207 365 462 Antisense
AAGCCCAGATTCGGTGTTTGATCGT 498 149 507 Antisense
GTCCAGCCACTCAAGTTGGTCAACT 183 477 536 Antisense
GCATTACCAAGTTGCCCGAATTTTG 107 307 600 Antisense
GAATGCGTGGTTCGATTGATTGCTC 331 331 646 Antisense
ATTGCTCCAAAGACTGCTGATCCAG 325 7 664 Antisense
GAAAAACTGGCGGAGGTCTGGCAAA 427 355 707 Antisense
AAGGCGGATTTGCTGTTGAGGATGT 93 161 755 Antisense
AAACTGCTTCAAACTGCGAGACGCT 167 127 881 Antisense
GCGAGACGCTTTTGCAACTCAGTGA 527 289 896 Antisense
AACGTGAGAAGAAGCCATCCCCAGT 136 145 1013 Antisense
Sequence Source Affymetrix Proprietary Database