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[184201_at]

Description C08A9.5 /REP_DB=WormBase Gene ID /WP=CE06787 /TR=Q17808 /GB=AAB53818.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 10      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 12
(-2.6)
A 		10.8
(-2.7)
A 		5.9
(-3)
A 		102.5
(3)
A 		97
B 12.2
(-2.7)
A 		24.5
(-1)
A 		9.6
(-3)
A 		54.4
(3)
A 		45
C 3.8
(-3)
A 		17.3
(-1.6)
A 		9.4
(-2.4)
A 		62.6
(3)
A 		59
avr 9.3
(-2.9) 		17.5
(-2.1) 		8.3
(-3) 		73.2
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 38.8
(0.9)
A 		6.2
(-3)
A 		17.2
(-1.7)
A 		17.9
(-1.6)
A 		56.1
(3)
A 		51.3
(2.4)
A 		50
B 7.6
(-3)
A 		21.6
(-0.8)
A 		15.3
(-1.8)
A 		19.4
(-1.1)
A 		45.4
(3)
A 		42.2
(2.5)
A 		38
C 17
(0.1)
A 		10.8
(-1.3)
A 		3.3
(-3)
A 		3.9
(-2.9)
A 		29.4
(3)
A 		9.2
(-1.6)
A 		26
avr 21.1
(-1.3) 		12.9
(-2.8) 		11.9
(-3) 		13.7
(-2.7) 		43.6
(3) 		34.2
(1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.4
(-1.7)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		15
(3)
A 		14
B 3.9
(-1.9)
A 		6
(-0.6)
A 		2.2
(-3)
A 		11.6
(3)
A 		9
C 1.3
(-3)
A 		5
(-0.6)
A 		3.3
(-1.7)
A 		10.6
(3)
A 		9
avr 3.2
(-2.5) 		4.4
(-1.8) 		2.3
(-3) 		12.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.2
(-1)
A 		2.2
(-3)
A 		3.7
(-2.4)
A 		4.5
(-2.1)
A 		16.9
(3)
A 		12.5
(1.2)
A 		15
B 2.7
(-3)
A 		7.2
(-1.3)
A 		3.7
(-2.6)
A 		5.2
(-2)
A 		18.4
(3)
A 		15.7
(2)
A 		16
C 6.3
(0.8)
A 		3.3
(-1.3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		9.5
(3)
A 		3.1
(-1.4)
A 		9
avr 5.4
(-1.7) 		4.2
(-2.3) 		2.7
(-3) 		3.5
(-2.6) 		14.9
(3) 		10.4
(0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17929
Sequence Type Exemplar sequence
Representative Public ID C08A9.5 NCBI
Target Description C08A9.5 /REP_DB=WormBase Gene ID /WP=CE06787 /TR=Q17808 /GB=AAB53818.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078362 NCBI Caenorhabditis elegans C08A9.5 (C08A9.5) mRNA, complete cds. 11/11 None
C08A9.5 ENSEMBL cdna:known chromosome:CEL140:X:17089953:17091624:-1 gene:C08A9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037429 8/11 Cross Hyb Matching Probes None
SNAP00000037422 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17089952-17091624(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08A9.5
Entrez Gene 182385 Entrez gene
SwissProt Q17808 EMBL-EBI
WormBase CE06787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53818 Hypothetical protein C08A9.5 [Caenorhabditis elegans] ref|NP_510763.1| C08A9.5 [Caenorhabditis elegans] 1.0E-148
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-71
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 9.0E-57
Sequence
Target Sequence 
>C. ELEGANS:184201_AT
aactgttcataatgttgctctcccacgcatacaatctcaccaaggaaaagaatttcaata
ttggttcgcctctgacacactgtgcgatgaggacagatcagcggagcagctcagccaacc
tgtccaaatatcaattgcaagttctcttccaagtttgttcaacttacgtgtgaagtcggt
taacaattttattattggaaataaaacattcaagtctaaaggaagtccatcagagccacg
atattacatgtacacgttccccgatgacgtggacaaggtggacatccgtgttacttcacc
tagcgagatttgtgggaaaattgttgctcgacgagttaattgccctttgtttgacgcatc
cggccttttggagcaaagcgaaaccttcttctatcagtcgttcaccacgtttgctggttt
ttcgttgaaaaaaagtgtcatcggccggcaatttcatttagctttcacagtgcatccaga
tgaaactttatgtggaacaccagacaacttttttgacattcccaacaatccagcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTTCATAATGTTGCTCTCCCA 256 143 252 Antisense
CCCACGCATACAATCTCACCAAGGA 64 259 273 Antisense
TTCGCCTCTGACACACTGTGCGATG 429 697 316 Antisense
AGATCAGCGGAGCAGCTCAGCCAAC 480 65 346 Antisense
GCAAGTTCTCTTCCAAGTTTGTTCA 374 321 388 Antisense
GGAAGTCCATCAGAGCCACGATATT 151 533 472 Antisense
ATCCGTGTTACTTCACCTAGCGAGA 537 9 535 Antisense
TAATTGCCCTTTGTTTGACGCATCC 431 633 588 Antisense
TCTATCAGTCGTTCACCACGTTTGC 124 615 641 Antisense
GTCATCGGCCGGCAATTTCATTTAG 66 467 688 Antisense
TTGACATTCCCAACAATCCAGCAAG 183 705 764 Antisense
Sequence Source Affymetrix Proprietary Database