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[184199_s_at]

Description C04F1.1 /REP_DB=WormBase Gene ID /WP=CE17364 /TR=O61738 /GB=AAC16984.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 31.1
(-3)
A 		251.9
(3)
P 		199.4
(1.6)
P 		116.8
(-0.7)
P 		221
B 26.3
(-3)
A 		290.6
(3)
P 		176.3
(0.4)
P 		88
(-1.6)
M 		264
C 7.3
(-3)
A 		266.3
(3)
P 		184.4
(1.1)
P 		129.9
(-0.2)
P 		259
avr 21.6
(-3) 		269.6
(3) 		186.7
(1) 		111.6
(-0.8) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 23.7
(-3)
A 		206.3
(1.9)
P 		157.2
(0.6)
P 		247
(3)
P 		127.6
(-0.2)
P 		50.6
(-2.3)
P 		223
B 14.1
(-3)
A 		220.3
(3)
P 		213
(2.8)
P 		199
(2.4)
P 		171.8
(1.6)
P 		42.9
(-2.2)
M 		206
C 14.1
(-3)
A 		239.1
(3)
P 		85.3
(-1.1)
P 		210.1
(2.2)
P 		204.2
(2.1)
P 		56.9
(-1.9)
P 		225
avr 17.3
(-3) 		221.9
(3) 		151.8
(0.9) 		218.7
(2.9) 		167.9
(1.4) 		50.1
(-2) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 11.3
(-3)
A 		54.7
(3)
P 		52.1
(2.6)
P 		17.1
(-2.2)
P 		43
B 8.4
(-3)
A 		71.8
(3)
P 		40.8
(0.1)
P 		18.8
(-2)
M 		63
C 2.4
(-3)
A 		76.6
(3)
P 		64.3
(2)
P 		21.9
(-1.4)
P 		74
avr 7.4
(-3) 		67.7
(3) 		52.4
(1.5) 		19.3
(-1.8) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 4.4
(-3)
A 		73.4
(3)
P 		34.2
(-0.4)
P 		62.7
(2.1)
P 		38.5
(-0)
P 		12.3
(-2.3)
P 		69
B 4.9
(-3)
A 		73.3
(3)
P 		51.7
(1.1)
P 		52.7
(1.2)
P 		69.8
(2.7)
P 		16
(-2)
M 		68
C 5.2
(-3)
A 		73
(3)
P 		21.7
(-1.5)
P 		42.3
(0.3)
P 		66.1
(2.4)
P 		19
(-1.8)
P 		68
avr 4.8
(-3) 		73.2
(3) 		35.9
(-0.3) 		52.6
(1.2) 		58.1
(1.7) 		15.8
(-2) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184199_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2049
Sequence Type Exemplar sequence
Representative Public ID C04F1.1 NCBI
Target Description C04F1.1 /REP_DB=WormBase Gene ID /WP=CE17364 /TR=O61738 /GB=AAC16984.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059268 NCBI Caenorhabditis elegans C04F1.1 (C04F1.1) mRNA, complete cds. 11/11 None
C04F1.1 ENSEMBL cdna:known chromosome:CEL140:I:5734520:5737443:-1 gene:C04F1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038425 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5734519-5737403(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04F1.1
Entrez Gene 172237 Entrez gene
SwissProt O61738 EMBL-EBI
WormBase CE17364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16984 Hypothetical protein C04F1.1 [Caenorhabditis elegans] ref|NP_491669.1| C04F1.1 [Caenorhabditis elegans] 1.0E-173
blast CAE67397 Hypothetical protein CBG12883 [Caenorhabditis briggsae] 1.0E-147
blast AAB52306 Hypothetical protein C03G6.6 [Caenorhabditis elegans] ref|NP_504878.2| C03G6.6 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.7E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491669.1 1 7-26
C04F1.1 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:184199_S_AT
gtcctcacaacttcttcacaattggcgttggtagagatattcgagcagaaaaacagttta
aaagaaaaatgcagaaacttggcaataatgtgtcattctttggagcagatccaattccat
acataaacggtgaattatattcacaaattggaaattattttccattagcaattggaggaa
aaagtggaatttcaaatgcacgagttatggagaaatatggctacattgaaacgaatatgg
ttcatatcgatattgtctactttttcaaagaaattctcaacattactactattgacaatc
tttggtttgatgcggaaggtgaagaatttggaaatgatttttttgatattttctacaaaa
atgggagatttgatcaaaatcaaatagatgtttgtcaaattaatattgaaattcacatta
tctccgacattgctcaacgcaaagaacagttcatggcatttttgaaacgaattattgaag
aaaaacgatatggagtgtttttcggagactcatttggacatattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCACAACTTCTTCACAATTGG 431 475 365 Antisense
ACTTCTTCACAATTGGCGTTGGTAG 358 103 374 Antisense
AAACTTGGCAATAATGTGTCATTCT 82 127 439 Antisense
AATGTGTCATTCTTTGGAGCAGATC 165 163 451 Antisense
GAGCAGATCCAATTCCATACATAAA 443 389 467 Antisense
CATATCGATATTGTCTACTTTTTCA 529 213 607 Antisense
ATTCACATTATCTCCGACATTGCTC 609 11 775 Antisense
CATTATCTCCGACATTGCTCAACGC 705 215 780 Antisense
TTGCTCAACGCAAAGAACAGTTCAT 80 701 794 Antisense
ATGGAGTGTTTTTCGGAGACTCATT 373 51 854 Antisense
CGGAGACTCATTTGGACATATTCGA 465 243 867 Antisense
Sequence Source Affymetrix Proprietary Database