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[184198_at] 7TM chemoreceptor, srt family

Description F48G7.6 /REP_DB=WormBase Gene ID /WP=CE10764 /TR=O61202 /GB=AAG24122.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 18      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 3.8
(-3)
A 		36.7
(1.2)
A 		5.8
(-2.7)
A 		50.7
(3)
A 		47
B 10.4
(-3)
A 		39
(2.2)
A 		15.3
(-2.1)
A 		43.3
(3)
A 		33
C 14.9
(-2.1)
A 		7
(-2.7)
A 		3
(-3)
A 		85.4
(3)
M 		82
avr 9.7
(-2.8) 		27.6
(-0.7) 		8
(-3) 		59.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4.4
(-3)
A 		5
(-2.8)
A 		16.3
(1)
A 		11.6
(-0.6)
A 		22.2
(3)
A 		18.2
(1.7)
A 		18
B 4.7
(-3)
A 		8.6
(-1.9)
A 		25.3
(3)
A 		22.4
(2.2)
A 		19.8
(1.4)
A 		20.9
(1.7)
P 		21
C 7.8
(-2.9)
A 		29
(2)
A 		8.3
(-2.8)
A 		7.3
(-3)
A 		16.2
(-0.9)
A 		33.2
(3)
A 		26
avr 5.6
(-3) 		14.2
(-0.2) 		16.6
(0.6) 		13.8
(-0.3) 		19.4
(1.5) 		24.1
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-3)
A 		8
(3)
A 		1.5
(-2.9)
A 		7.4
(2.5)
A 		7
B 3.3
(-3)
A 		9.6
(3)
A 		3.6
(-2.7)
A 		9.2
(2.6)
A 		6
C 4.9
(-1.3)
A 		2
(-2.6)
A 		1
(-3)
A 		14.4
(3)
M 		13
avr 3.2
(-2.1) 		6.5
(0.3) 		2
(-3) 		10.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.8
(-2)
A 		3.5
(-0.3)
A 		2.9
(-0.9)
A 		6.7
(3)
A 		4.4
(0.7)
A 		6
B 1.6
(-3)
A 		2.9
(-1.8)
A 		6.2
(1.2)
A 		5.9
(1)
A 		8.1
(3)
A 		7.8
(2.7)
P 		7
C 2.9
(-2.1)
A 		8.9
(1.6)
A 		2.1
(-2.6)
A 		1.5
(-3)
A 		5.3
(-0.6)
A 		11.1
(3)
A 		10
avr 1.8
(-3) 		4.5
(-0.3) 		3.9
(-0.9) 		3.4
(-1.4) 		6.7
(1.9) 		7.8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15050
Sequence Type Exemplar sequence
Representative Public ID F48G7.6 NCBI
Target Description F48G7.6 /REP_DB=WormBase Gene ID /WP=CE10764 /TR=O61202 /GB=AAG24122.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070867 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-17) (srt-17) mRNA, complete cds. 11/11 None
GENEFINDER00000037311 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:622099:624851:-1 10/11 None
F48G7.6 ENSEMBL cdna:known chromosome:CEL140:V:623754:624851:-1 gene:F48G7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037291 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:623753-624851(-) 93.52 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-17
Ensembl F48G7.6
Entrez Gene 185994 Entrez gene
SwissProt O61202 EMBL-EBI
WormBase CE10764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24122 Serpentine receptor, class t protein 17 [Caenorhabditis elegans] ref|NP_503268.1| Serpentine Receptor, class T family member (srt-17) [Caenorhabditis elegans] 0.0
blast AAG24122 Serpentine receptor, class t protein 17 [Caenorhabditis elegans] ref|NP_503268.1| Serpentine Receptor, class T family member (srt-17) [Caenorhabditis elegans] 1.0E-173
blast AAG24121 Hypothetical protein F48G7.5 [Caenorhabditis elegans] ref|NP_503267.1| F48G7.5 [Caenorhabditis elegans] 1.0E-100
blast NP_503835 Serpentine Receptor, class T family member (srt-16) [Caenorhabditis elegans] gb|AAG23998.3| Serpentine receptor, class t protein 16 [Caenorhabditis elegans] 2.0E-95
blast NP_503835 Serpentine Receptor, class T family member (srt-16) [Caenorhabditis elegans] gb|AAG23998.3| Serpentine receptor, class t protein 16 [Caenorhabditis elegans] 5.0E-95
blast NP_505332 Serpentine Receptor, class T family member (srt-18) [Caenorhabditis elegans] gb|AAC48103.2| Serpentine receptor, class t protein 18 [Caenorhabditis elegans] 1.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.4E-117
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.9E-17
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.5E-14
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.6E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503268.1 6 49-71,84-106,121-143,164-186,210-232,252-274
F48G7.6 6 49-71,84-106,121-143,164-186,210-232,252-274
GENEFINDER00000037311 7 49-71,84-106,121-143,164-186,210-232,252-274,306-325
Sequence
Target Sequence 
>C. ELEGANS:184198_AT
gctctctgggtttgggatcttggatgggatgttgtgtttctagtatagtgctggcagtta
tcagagctggtgacgtggattcgaacagatggataatgcgaatttttgatggcttgaaga
tttatattgtcttgggcatatgccttgcatattttttgataacaatttttctcgtgaaac
cagtggtttttaacgaaaactattcatcttggtttaccgatcccggacttggtcacgacc
cagccttgtacaaaaactcgctgattgcctttaacaattttgctgttgcaatttgcacaa
ttgtgttctatggctatatttcttacgtttatctgaaaaaatccaaatctggcaatagca
gcacaaaactcacaaaatcacaactctcgattttgcttcaaacgttctttttctgctttt
ttcatgcagtgacgtcacttatctacgtttacatggacattttccaggtctacgatatgc
tcattttcatcgctcattttgggtggcagtgcagtagtggtacgtttgcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCTGGGTTTGGGATCTTGGAT 185 301 380 Antisense
TTCATCTTGGTTTACCGATCCCGGA 479 683 582 Antisense
GACCCAGCCTTGTACAAAAACTCGC 125 381 616 Antisense
AAAAACTCGCTGATTGCCTTTAACA 491 127 631 Antisense
ATCACAACTCTCGATTTTGCTTCAA 604 27 756 Antisense
TGCTTCAAACGTTCTTTTTCTGCTT 125 579 773 Antisense
GCTTTTTTCATGCAGTGACGTCACT 630 303 794 Antisense
GTGACGTCACTTATCTACGTTTACA 530 479 808 Antisense
TTTCCAGGTCTACGATATGCTCATT 334 669 840 Antisense
TTCATCGCTCATTTTGGGTGGCAGT 259 687 865 Antisense
GTGCAGTAGTGGTACGTTTGCGCCA 119 481 888 Antisense
Sequence Source Affymetrix Proprietary Database