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[184197_at]

Description H03G16.1 /REP_DB=WormBase Gene ID /WP=CE18801 /TR=Q9XU23 /GB=CAB07225.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.3
(-3)
A 		17.7
(-1.7)
A 		8.2
(-2.9)
A 		56.7
(3)
A 		49
B 7.3
(-3)
A 		15.3
(0)
A 		8.4
(-2.6)
A 		23.1
(3)
A 		16
C 10.3
(-2.7)
A 		11.1
(-2.6)
A 		8.8
(-3)
A 		44.2
(3)
A 		35
avr 8.3
(-3) 		14.7
(-1.8) 		8.5
(-3) 		41.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 15.5
(-2.4)
A 		9.6
(-3)
A 		13.8
(-2.6)
A 		60.6
(2.2)
A 		68.2
(3)
A 		26.9
(-1.2)
A 		59
B 26.6
(3)
A 		9.7
(-1.2)
A 		2.7
(-3)
A 		11.5
(-0.8)
A 		9
(-1.4)
A 		5.7
(-2.2)
A 		24
C 15.7
(-0.5)
A 		31.5
(3)
A 		21.6
(0.8)
A 		4.6
(-3)
A 		6.9
(-2.5)
A 		22.6
(1)
A 		27
avr 19.3
(-0.4) 		16.9
(-1.4) 		12.7
(-3) 		25.6
(2.1) 		28
(3) 		18.4
(-0.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.7
(-2.4)
A 		3.8
(-1.4)
A 		2.1
(-3)
A 		8.3
(3)
A 		6
B 2.3
(-2.2)
A 		3.8
(0.8)
A 		1.9
(-3)
A 		4.9
(3)
A 		3
C 3.4
(-2.6)
A 		3.2
(-2.9)
A 		3.1
(-3)
A 		7.4
(3)
A 		4
avr 2.8
(-2.5) 		3.6
(-1.4) 		2.4
(-3) 		6.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.8
(-3)
A 		3.4
(-2.8)
A 		3
(-2.9)
A 		15.4
(1.2)
A 		20.6
(3)
A 		6.5
(-1.8)
A 		18
B 9.2
(3)
A 		3.2
(-1.2)
A 		0.7
(-3)
A 		3
(-1.4)
A 		3.7
(-0.9)
A 		2.1
(-2)
A 		9
C 5.8
(0.4)
A 		9.6
(3)
A 		5.5
(0.2)
A 		0.9
(-3)
A 		2.2
(-2.1)
A 		7.6
(1.6)
A 		9
avr 5.9
(-0.1) 		5.4
(-0.6) 		3.1
(-3) 		6.4
(0.5) 		8.8
(3) 		5.4
(-0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17943
Sequence Type Exemplar sequence
Representative Public ID H03G16.1 NCBI
Target Description H03G16.1 /REP_DB=WormBase Gene ID /WP=CE18801 /TR=Q9XU23 /GB=CAB07225.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078099 NCBI Caenorhabditis elegans H03G16.1 (H03G16.1) mRNA, complete cds. 11/11 None
SNAP00000037550 ENSEMBL cdna:SNAP chromosome:CEL140:X:15053292:15054568:1 11/11 None
GENEFINDER00000037563 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15053907:15054568:1 10/11 None
H03G16.1 ENSEMBL cdna:known chromosome:CEL140:X:15053799:15054568:1 gene:H03G16.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15053798-15054568(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03G16.1
Entrez Gene 186674 Entrez gene
SwissProt Q9XU23 EMBL-EBI
WormBase CE18801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07225 Hypothetical protein H03G16.1 [Caenorhabditis elegans] ref|NP_510500.1| H03G16.1 [Caenorhabditis elegans] 1.0E-140
blast CAB07225 Hypothetical protein H03G16.1 [Caenorhabditis elegans] ref|NP_510500.1| H03G16.1 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.8E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.8E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.8E-9
Sequence
Target Sequence 
>C. ELEGANS:184197_AT
aaaatgacacaactcgacctaaatcgaaacaaatggttcgagttcaataacaaggattac
gacggagaccttaaagatttctgtaatcaattcgatcgattcgttgattcagaaaacctt
tggaaaatgaagtttgtttccctaaacaactggaacgttggaacagcactcccaaggatc
ctgaaaaaatgtgacaccgagagcttgaagtcaataaaactaaagatgaaatacgagaca
gctgaaagtatggaaaatatcgccgcactcgaacagtggaatcatgttaaggaattggaa
atcgaagttccaaggggaaagaagaaaccaaatctcgaatacttcagccatgtcacagat
ttgaacatgactttcgattttttcacaaatgagtttgtcccaagaattcaagacatgagt
ttttatttgccaggtaacctgaaaaatggacgatttgagtatgacttcattgaggaatac
gattttgttgatgcagaatttcgtgtggagaacgacaaggacaagaaacgtgatgtttca
gccaatgctatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGACACAACTCGACCTAAATC 157 131 118 Antisense
GACGGAGACCTTAAAGATTTCTGTA 90 377 178 Antisense
CTGGAACGTTGGAACAGCACTCCCA 333 241 267 Antisense
AACAGCACTCCCAAGGATCCTGAAA 275 137 279 Antisense
AAATGTGACACCGAGAGCTTGAAGT 271 121 304 Antisense
GTATGGAAAATATCGCCGCACTCGA 687 453 365 Antisense
ATCGCCGCACTCGAACAGTGGAATC 279 37 376 Antisense
CTCGAATACTTCAGCCATGTCACAG 124 229 451 Antisense
GAACATGACTTTCGATTTTTTCACA 631 351 480 Antisense
GAGTTTTTATTTGCCAGGTAACCTG 37 1 534 Antisense
GTGATGTTTCAGCCAATGCTATGCA 608 483 647 Antisense
Sequence Source Affymetrix Proprietary Database