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[184196_at]

Description K09D9.9 /REP_DB=WormBase Gene ID /WP=CE21063 /TR=Q9N5J1 /GB=AAF39927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 36      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3
(-3)
A 		7.7
(0)
A 		3.7
(-2.5)
A 		12.3
(3)
A 		9
B 19.5
(-0.2)
A 		37.2
(3)
A 		5.5
(-2.7)
A 		3.7
(-3)
A 		34
C 5
(-2)
A 		8.9
(1.6)
A 		3.9
(-3)
A 		10.4
(3)
A 		7
avr 9.2
(-0.9) 		17.9
(3) 		4.4
(-3) 		8.8
(-1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 4.5
(-2.9)
A 		1.5
(-3)
A 		28
(-2.4)
A 		281
(3)
P 		234.6
(2)
P 		54.6
(-1.9)
A 		280
B 3.2
(-3)
A 		1.2
(-3)
A 		60.3
(-1.6)
A 		263.1
(3)
P 		233.1
(2.3)
P 		38.3
(-2.2)
A 		262
C 1.6
(-3)
A 		4
(-2.9)
A 		30
(-2.3)
A 		250.6
(3)
P 		232.6
(2.6)
P 		80.4
(-1.1)
M 		249
avr 3.1
(-3) 		2.2
(-3) 		39.4
(-2.2) 		264.9
(3) 		233.4
(2.3) 		57.8
(-1.7) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-2.3)
A 		1.7
(2.3)
A 		1
(-3)
A 		1.8
(3)
A 		1
B 6.2
(0.9)
A 		9.2
(3)
A 		1.3
(-2.6)
A 		0.8
(-3)
A 		8
C 1.7
(-1.5)
A 		2.6
(3)
A 		1.4
(-3)
A 		1.7
(-1.5)
A 		1
avr 3
(0.3) 		4.5
(3) 		1.2
(-3) 		1.4
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.5
(-3)
A 		6.1
(-2.5)
A 		71.3
(3)
P 		70.8
(3)
P 		13.3
(-1.9)
A 		71
B 1.1
(-3)
A 		0.4
(-3)
A 		14.6
(-2.1)
A 		69.7
(1.4)
P 		94.7
(3)
P 		14.3
(-2.1)
A 		94
C 0.6
(-3)
A 		1.2
(-3)
A 		7.6
(-2.4)
A 		50.4
(1)
P 		75.3
(3)
P 		26.9
(-0.9)
M 		75
avr 0.8
(-3) 		0.7
(-3) 		9.4
(-2.3) 		63.8
(1.8) 		80.3
(3) 		18.2
(-1.7) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15006
Sequence Type Exemplar sequence
Representative Public ID K09D9.9 NCBI
Target Description K09D9.9 /REP_DB=WormBase Gene ID /WP=CE21063 /TR=Q9N5J1 /GB=AAF39927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071712 NCBI Caenorhabditis elegans K09D9.9 (K09D9.9) mRNA, complete cds. 11/11 None
SNAP00000015703 ENSEMBL cdna:SNAP chromosome:CEL140:V:3992468:3993952:-1 11/11 None
GENEFINDER00000015714 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3991051:3995751:-1 11/11 None
K09D9.9 ENSEMBL cdna:known chromosome:CEL140:V:3992468:3993952:-1 gene:K09D9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3992467-3993952(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09D9.9
Entrez Gene 187211 Entrez gene
SwissProt Q9N5J1 EMBL-EBI
WormBase CE21063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-155
blast AAF39927 Hypothetical protein K09D9.9 [Caenorhabditis elegans] ref|NP_504113.1| K09D9.9 [Caenorhabditis elegans] 1.0E-143
blast AAF39927 Hypothetical protein K09D9.9 [Caenorhabditis elegans] ref|NP_504113.1| K09D9.9 [Caenorhabditis elegans] 1.0E-127
blast AAF39927 Hypothetical protein K09D9.9 [Caenorhabditis elegans] ref|NP_504113.1| K09D9.9 [Caenorhabditis elegans] 1.0E-119
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-110
blast CAE58184 Hypothetical protein CBG01276 [Caenorhabditis briggsae] 1.0E-96
blast CAE58184 Hypothetical protein CBG01276 [Caenorhabditis briggsae] 4.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504113.1 1 7-29
K09D9.9 1 7-29
GENEFINDER00000015714 5 12-34,84-106,127-149,169-191,230-247
Sequence
Target Sequence 
>C. ELEGANS:184196_AT
ttcacagagacatgtaccgccgttgtcgtttcatttgacggtgactcttccctccgagat
ctggatcttgataaaattctaaaatcctgcacaattcatcacttgaaattttcgtctttg
aaagctgaaggtttggcaaactcgctgaaacgtatcagctcggtgatcgatgttttgata
gtgggaccttccaaaggatcttctcaccttttgtttcaacagtttttgggagactattac
gattttcttcctccagtttgtcaggtgaactttgcgcataccttaccccgctctcgtgaa
gaaaacggatttgtcgagtcaatgcaacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAGAGACATGTACCGCCGTTG 613 681 367 Antisense
GTCGTTTCATTTGACGGTGACTCTT 600 473 391 Antisense
CTTCCCTCCGAGATCTGGATCTTGA 71 221 413 Antisense
AAATCCTGCACAATTCATCACTTGA 445 119 448 Antisense
GAAACGTATCAGCTCGGTGATCGAT 110 359 513 Antisense
GATGTTTTGATAGTGGGACCTTCCA 669 409 535 Antisense
ATCTTCTCACCTTTTGTTTCAACAG 653 29 564 Antisense
GAGACTATTACGATTTTCTTCCTCC 671 391 596 Antisense
TTCTTCCTCCAGTTTGTCAGGTGAA 211 689 611 Antisense
AGGTGAACTTTGCGCATACCTTACC 435 47 629 Antisense
GGATTTGTCGAGTCAATGCAACGTC 612 507 673 Antisense
Sequence Source Affymetrix Proprietary Database