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[184195_at]

Description F09G2.4 /REP_DB=WormBase Gene ID /WP=CE09299 /TR=O17403 /GB=AAB71322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 47      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 373.3
(3)
P 		282.6
(-2)
P 		280.4
(-2.2)
P 		265.4
(-3)
P 		108
B 380.8
(3)
P 		241.4
(-3)
P 		282.7
(-1.2)
P 		376.7
(2.8)
P 		139
C 489.5
(3)
P 		262
(-1.7)
P 		322.1
(-0.5)
P 		202
(-3)
P 		288
avr 414.5
(3) 		262
(-3) 		295.1
(-1.7) 		281.4
(-2.2) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 306.1
(-3)
P 		332.6
(-2.2)
P 		435.9
(0.9)
P 		451
(1.4)
P 		505.3
(3)
P 		429.6
(0.7)
P 		199
B 312.4
(-2.8)
P 		296.7
(-3)
P 		387.2
(-1.6)
P 		355.6
(-2.1)
P 		516.1
(0.4)
P 		682
(3)
P 		385
C 312.1
(-2.5)
P 		384.3
(-1.6)
P 		349.9
(-2)
P 		424.4
(-1.1)
P 		277.7
(-3)
P 		730.1
(3)
P 		452
avr 310.2
(-3) 		337.9
(-2.5) 		391
(-1.4) 		410.3
(-1) 		433
(-0.6) 		613.9
(3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 135.9
(3)
P 		61.3
(-1.6)
P 		73.3
(-0.9)
P 		38.8
(-3)
P 		97
B 121.4
(3)
P 		59.6
(-3)
P 		65.5
(-2.4)
P 		80.3
(-1)
P 		62
C 162
(3)
P 		75.3
(-1.1)
P 		112.2
(0.7)
P 		34.1
(-3)
P 		128
avr 139.8
(3) 		65.4
(-2) 		83.7
(-0.8) 		51.1
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 56.4
(-3)
P 		118.3
(0.9)
P 		94.9
(-0.6)
P 		114.4
(0.6)
P 		152.5
(3)
P 		104.6
(0)
P 		96
B 108.7
(-2.4)
P 		98.7
(-2.8)
P 		94
(-3)
P 		94.2
(-3)
P 		209.7
(1.3)
P 		254.3
(3)
P 		160
C 115.7
(-1.9)
P 		117.3
(-1.8)
P 		89
(-2.9)
P 		85.4
(-3)
P 		89.8
(-2.8)
P 		244.4
(3)
P 		159
avr 93.6
(-2.9) 		111.4
(-2) 		92.6
(-3) 		98
(-2.7) 		150.7
(0.2) 		201.1
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12003
Sequence Type Exemplar sequence
Representative Public ID F09G2.4 NCBI
Target Description F09G2.4 /REP_DB=WormBase Gene ID /WP=CE09299 /TR=O17403 /GB=AAB71322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072421 NCBI Caenorhabditis elegans F09G2.4 (F09G2.4) mRNA, complete cds. 11/11 None
SNAP00000025944 ENSEMBL cdna:SNAP chromosome:CEL140:V:7181800:7185386:1 11/11 None
GENEFINDER00000025956 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7181800:7187430:1 11/11 None
F09G2.4 ENSEMBL cdna:known chromosome:CEL140:V:7181791:7185440:1 gene:F09G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7181800-7185387(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G2.4
Entrez Gene 179103 Entrez gene
SwissProt O17403 EMBL-EBI
WormBase CE09299 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249816_AT cleavage and polyadenylation specificity factor at
CANINE:1586947_AT similar to cleavage and polyadenylation specific factor 2 cfa
CANINE_2:CFA.8873.1.A1_AT similar to cleavage and polyadenylation specific factor 2 cfa
CANINE_2:CFAAFFX.17069.1.S1_S_AT similar to cleavage and polyadenylation specific factor 2 cfa
CANINE_2:CFAAFFX.17079.1.S1_AT similar to cleavage and polyadenylation specific factor 2 cfa
CANINE_2:CFAAFFX.17079.1.S1_S_AT similar to cleavage and polyadenylation specific factor 2 cfa
DROSOPHILA_2:1622930_A_AT dm
DROSGENOME1:153806_AT dm
CHICKEN:GGAAFFX.6810.1.S1_AT cleavage and polyadenylation specific factor 2, 100kDa gga
CHICKEN:GGAAFFX.6810.2.S1_S_AT cleavage and polyadenylation specific factor 2, 100kDa gga
HG-U133_PLUS_2:233208_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U133B:233208_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U133_PLUS_2:225986_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U133B:225986_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HU35KSUBA:H58970_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HU35KSUBC:RC_N69466_AT cleavage and polyadenylation specific factor 2, 100kDa hs
U133_X3P:HS.224961.1.S1_3P_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
U133_X3P:HS.224961.0.S1_3P_AT cleavage and polyadenylation specific factor 2, 100kDa hs
U133_X3P:233208_3P_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
U133_X3P:225986_3P_X_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U133_PLUS_2:225994_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U133B:225994_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HG-U95D:73177_AT cleavage and polyadenylation specific factor 2, 100kDa hs
HU35KSUBA:H52390_AT Cleavage and polyadenylation specific factor 2, 100kDa hs
MG-U74AV2:104161_AT cleavage and polyadenylation specific factor 2 mm
MOUSE430_2:1431089_AT cleavage and polyadenylation specific factor 2 mm
MOE430B:1431089_AT cleavage and polyadenylation specific factor 2 mm
MU11KSUBA:C78681_RC_AT cleavage and polyadenylation specific factor 2 mm
MU11KSUBA:AF012822_S_AT cleavage and polyadenylation specific factor 2 mm
MG-U74AV2:160542_AT cleavage and polyadenylation specific factor 2 mm
MG-U74BV2:164117_AT cleavage and polyadenylation specific factor 2 mm
MOE430A:1420936_S_AT cleavage and polyadenylation specific factor 2 mm
MOUSE430A_2:1420936_S_AT cleavage and polyadenylation specific factor 2 mm
MOUSE430_2:1420936_S_AT cleavage and polyadenylation specific factor 2 mm
MOE430A:1420937_AT cleavage and polyadenylation specific factor 2 mm
MOUSE430A_2:1420937_AT cleavage and polyadenylation specific factor 2 mm
MOUSE430_2:1420937_AT cleavage and polyadenylation specific factor 2 mm
MG-U74CV2:133205_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MOUSE430_2:1443083_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MOE430B:1443083_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MG-U74CV2:167284_R_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MU19KSUBA:TC17777_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MU19KSUBA:TC22676_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MU19KSUBB:TC30992_S_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MU19KSUBB:TC34236_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
MU19KSUBC:TC41617_S_AT Cleavage and polyadenylation specific factor 2, mRNA (cDNA clone MGC:5855 IMAGE:3497854) mm
RAE230B:1382515_AT cleavage and polyadenylation specific factor 2 (predicted) rn
RAT230_2:1382515_AT cleavage and polyadenylation specific factor 2 (predicted) rn
RAE230A:1389293_AT Cleavage and polyadenylation specific factor 2 (predicted) rn
RAT230_2:1389293_AT Cleavage and polyadenylation specific factor 2 (predicted) rn
RG-U34B:RC_AA946387_AT Cleavage and polyadenylation specific factor 2 (predicted) rn
RG-U34A:RC_AI639474_AT Cleavage and polyadenylation specific factor 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_504822 F09G2.4 [Caenorhabditis elegans] gb|AAB71322.1| Hypothetical protein F09G2.4 [Caenorhabditis elegans] sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor, 100 kDa subunit (CPSF 100 kDa subunit) 0.0
blast CAE72015 Hypothetical protein CBG19097 [Caenorhabditis briggsae] 0.0
blast Q9W799 Cleavage and polyadenylation specificity factor, 100 kDa subunit (CPSF 100 kDa subunit) gb|AAD33061.1| cleavage and polyadenylation specificity factor 100 kDa subunit [Xenopus laevis] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 6.8E-9
Sequence
Target Sequence 
>C. ELEGANS:184195_AT
agtggctcttagtgatgctcttttagctgatattcagttcaaggaggtttccgaaggaaa
tagtcttgcgtggatcgatgctagagttatggaaaaagaagccatcgataatatgctagc
tgtaggaacatctaatctcatgatcgatgataaaaatcgagaggaagacgtcaatgatca
agaagaaaacggagccacggagggtgaaggaaatgccgaaccaatggaaattggtgaaaa
cggttcacaggagtcgctggcgatatctgaaagtggaaaagaggttgaaaatgggcacac
aaatgatagtcgaacgaaaaagggaacaaaaggaaaaatacgtggaaatctcattctcga
tcctctaccgaaacggctaattcctattcaccaggctgtctttgtcaacgatccgaaact
ttccgacttcaaaaaccttctcacagacaaagggtacaaggcagaatttctcagcggaac
tcttcttatcaacggaggaaattgttcgattcgtcgtaatgatactggagtcttccaaat
ggaaggtgctttcaccaaagactactaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGCTCTTAGTGATGCTCTTTTA 455 59 1935 Antisense
TAGTCTTGCGTGGATCGATGCTAGA 364 653 1995 Antisense
AACGGTTCACAGGAGTCGCTGGCGA 578 143 2173 Antisense
GTCGCTGGCGATATCTGAAAGTGGA 446 475 2187 Antisense
CTCGATCCTCTACCGAAACGGCTAA 418 233 2290 Antisense
GAAACGGCTAATTCCTATTCACCAG 537 357 2304 Antisense
TATTCACCAGGCTGTCTTTGTCAAC 41 665 2319 Antisense
GTCAACGATCCGAAACTTTCCGACT 687 459 2338 Antisense
CCGACTTCAAAAACCTTCTCACAGA 659 263 2357 Antisense
ATTTCTCAGCGGAACTCTTCTTATC 443 15 2400 Antisense
GGTGCTTTCACCAAAGACTACTACA 335 501 2479 Antisense
Sequence Source Affymetrix Proprietary Database