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[184194_s_at]

Description ZK1025.5 /REP_DB=WormBase Gene ID /WP=CE19332 /TR=Q9U1P2 /GB=CAA18363.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1735
1 2 3 4 range
A 0.8
(-3)
A 		1586.5
(2.5)
P 		1736.1
(3)
P 		45.9
(-2.8)
A 		1735
B 16.2
(-3)
A 		1380.8
(3)
P 		1353.8
(2.9)
P 		30.6
(-2.9)
A 		1365
C 12.3
(-3)
A 		1325.4
(1.6)
P 		1723.4
(3)
P 		80
(-2.8)
P 		1711
avr 9.8
(-3) 		1430.9
(2.3) 		1604.4
(3) 		52.2
(-2.8) 		1595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 77.4
(0.7)
A 		123.7
(3)
P 		60.5
(-0.1)
P 		3.2
(-2.9)
A 		2.1
(-3)
A 		3.5
(-2.9)
A 		122
B 27.9
(-2.5)
A 		146.6
(3)
P 		56.4
(-1.2)
A 		16.6
(-3)
A 		25.9
(-2.6)
A 		17.3
(-3)
A 		130
C 43.2
(-1.7)
A 		169.4
(3)
P 		68
(-0.8)
P 		34.6
(-2)
A 		11.3
(-2.9)
A 		9.1
(-3)
A 		160
avr 49.5
(-1.3) 		146.6
(3) 		61.6
(-0.7) 		18.1
(-2.6) 		13.1
(-2.9) 		10
(-3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 0.3
(-3)
A 		344.4
(1.6)
P 		453.9
(3)
P 		6.7
(-2.9)
A 		454
B 5.2
(-3)
A 		341
(3)
P 		313.7
(2.5)
P 		6.5
(-3)
A 		336
C 4.1
(-3)
A 		381.1
(0.8)
P 		600.7
(3)
P 		13.5
(-2.9)
P 		597
avr 3.2
(-3) 		355.5
(1.7) 		456.1
(3) 		8.9
(-2.9) 		453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 14.3
(-1.1)
A 		44
(3)
P 		13.2
(-1.3)
P 		0.8
(-3)
A 		0.6
(-3)
A 		0.9
(-3)
A 		43
B 9.7
(-2.3)
A 		48.8
(3)
P 		13.7
(-1.7)
A 		4.4
(-3)
A 		10.5
(-2.2)
A 		6.4
(-2.7)
A 		44
C 16
(-1.4)
A 		51.7
(3)
P 		17.3
(-1.2)
P 		7
(-2.5)
A 		3.7
(-2.9)
A 		3
(-3)
A 		49
avr 13.3
(-1.7) 		48.2
(3) 		14.7
(-1.5) 		4.1
(-2.9) 		4.9
(-2.8) 		3.4
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184194_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1070
Sequence Type Exemplar sequence
Representative Public ID ZK1025.5 NCBI
Target Description ZK1025.5 /REP_DB=WormBase Gene ID /WP=CE19332 /TR=Q9U1P2 /GB=CAA18363.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060528(11), NM_060524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060528 NCBI Caenorhabditis elegans ZK1025.7 (ZK1025.7) mRNA, complete cds. 11/11 A 
NM_060524 NCBI Caenorhabditis elegans ZK1025.5 (ZK1025.5) mRNA, complete cds. 11/11 None
SNAP00000038817 ENSEMBL cdna:SNAP chromosome:CEL140:I:11462022:11463090:-1 11/11 None
GENEFINDER00000038832 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11462022:11462645:-1 11/11 None
SNAP00000038820 ENSEMBL cdna:SNAP chromosome:CEL140:I:11467205:11475656:1 11/11 None
GENEFINDER00000038826 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11473295:11475656:1 11/11 None
ZK1025.5 ENSEMBL cdna:known chromosome:CEL140:I:11462022:11462645:-1 gene:ZK1025.5 11/11 None
ZK1025.7 ENSEMBL cdna:known chromosome:CEL140:I:11473264:11475714:1 gene:ZK1025.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11474963-11475587(+) 99.69 99.69
chrI:11461952-11462576(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZK1025.5
ZK1025.7
Entrez Gene 173031 Entrez gene
191494 Entrez gene
WormBase CE19332 Wormbase
CE19334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 0.0
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 1.0E-160
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 1.0E-148
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.2E-16
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.8E-19
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.0E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492929.1 1 9-31
ZK1025.7 1 9-31
GENEFINDER00000038826 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:184194_S_AT
atggcaaatggcactgttctacactttcggttcaatgtgaagcaaatccgagcgaaaatt
gttcgaaagtcttatcgatttttcccaaatgacacagctgggcatattaggaatatgcat
gatacgatgaacaagattttcgaaaattcaccacctgcattttcgtacaagccaattgag
actttgaataagtgcatagccaaagtcaaatccgacgtatgccatagcactggtggaatc
tgcaaagctgcgatggataatgtcaccaattgggtatacaacacgactgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAAATGGCACTGTTCTACACT 81 53 13 Antisense
ACTGTTCTACACTTTCGGTTCAATG 132 95 25 Antisense
AAGTCTTATCGATTTTTCCCAAATG 474 155 79 Antisense
GACACAGCTGGGCATATTAGGAATA 453 365 103 Antisense
AAGATTTTCGAAAATTCACCACCTG 205 155 145 Antisense
CCACCTGCATTTTCGTACAAGCCAA 441 273 163 Antisense
GTGCATAGCCAAAGTCAAATCCGAC 551 479 204 Antisense
ATCCGACGTATGCCATAGCACTGGT 89 39 222 Antisense
CACTGGTGGAATCTGCAAAGCTGCG 139 199 240 Antisense
AGCTGCGATGGATAATGTCACCAAT 285 81 258 Antisense
TTGGGTATACAACACGACTGAAGGA 691 551 282 Antisense
Sequence Source Affymetrix Proprietary Database