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[184192_at]

Description C45H4.7 /REP_DB=WormBase Gene ID /WP=CE08740 /TR=O44696 /GB=AAC25874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 08      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.7
(-3)
A 		5.5
(-2.5)
A 		23.9
(3)
A 		10.1
(-1.1)
A 		20
B 3
(-3)
A 		8.1
(-1.8)
A 		4.6
(-2.6)
A 		28.4
(3)
A 		25
C 1.5
(-3)
A 		2
(-3)
A 		3.6
(-2.8)
A 		78.6
(3)
P 		77
avr 2.7
(-3) 		5.2
(-2.6) 		10.7
(-1.7) 		39
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.5
(3)
A 		1.6
(-3)
A 		4
(-1.5)
A 		1.9
(-2.8)
A 		6.1
(-0.3)
A 		6.2
(-0.2)
A 		10
B 1.8
(-3)
A 		2.3
(-2.8)
A 		16
(3)
A 		2.5
(-2.7)
A 		5
(-1.6)
A 		2.3
(-2.8)
A 		14
C 1.3
(-3)
A 		1.9
(-2.6)
A 		3.3
(-1.8)
A 		11.5
(3)
A 		3.1
(-1.9)
A 		2
(-2.6)
A 		10
avr 4.9
(0.1) 		1.9
(-3) 		7.8
(3) 		5.3
(0.5) 		4.7
(-0.2) 		3.5
(-1.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-2.9)
A 		1.2
(-3)
A 		6.2
(3)
A 		1.5
(-2.6)
A 		5
B 1
(-3)
A 		2
(-1.8)
A 		1.1
(-2.9)
A 		6
(3)
A 		5
C 0.5
(-3)
A 		0.6
(-3)
A 		1.2
(-2.7)
A 		13.3
(3)
P 		13
avr 0.9
(-3) 		1.3
(-2.6) 		2.8
(-1.1) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.1
(3)
A 		0.6
(-2.6)
A 		0.9
(-1.5)
A 		0.5
(-3)
A 		1.8
(1.9)
A 		1.5
(0.8)
A 		2
B 0.6
(-3)
A 		0.8
(-2.6)
A 		3.9
(3)
A 		0.7
(-2.8)
A 		2
(-0.5)
A 		0.9
(-2.5)
A 		3
C 0.5
(-3)
A 		0.6
(-2.7)
A 		0.8
(-2)
A 		2.3
(3)
A 		1
(-1.3)
A 		0.7
(-2.3)
A 		2
avr 1.1
(-1) 		0.7
(-3) 		1.9
(3) 		1.2
(-0.5) 		1.6
(1.5) 		1
(-1.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14897
Sequence Type Exemplar sequence
Representative Public ID C45H4.7 NCBI
Target Description C45H4.7 /REP_DB=WormBase Gene ID /WP=CE08740 /TR=O44696 /GB=AAC25874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071183(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071183 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-21) (srbc-21) mRNA, complete cds. 9/11 None
C45H4.7 ENSEMBL cdna:known chromosome:CEL140:V:2155360:2156463:1 gene:C45H4.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009342 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009359 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2155359-2156463(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-21
Ensembl C45H4.7
Entrez Gene 183488 Entrez gene
SwissProt O44696 EMBL-EBI
WormBase CE38050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25874 Serpentine receptor, class bc (class b-like) protein 21 [Caenorhabditis elegans] ref|NP_503584.2| Serpentine Receptor, class BC (class B-like) family member (srbc-21) [Caenorhabditis elegans] 1.0E-130
blast AAC25873 Serpentine receptor, class bc (class b-like) protein 22 [Caenorhabditis elegans] 4.0E-98
blast NP_503585 Serpentine Receptor, class BC (class B-like) family member (srbc-22) [Caenorhabditis elegans] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.9E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503584.2 6 4-26,39-61,76-98,118-140,173-195,208-230
C45H4.7 6 4-26,39-61,76-98,118-140,173-195,208-230
Sequence
Target Sequence 
>C. ELEGANS:184192_AT
gagccgccgtgacattgatgattacagttgagagaatattggtaaaacttagagacccgg
gaaccgtcggctgctaccgtgtcaaattccaggcagtttttacacctattttctaccgaa
actaccgcccacttatatcaaacttggcaattctaagtttgatagttggctacggactat
ttgactatttaattatgcgctttttgtgcgatttcaagtttgtaattcccactaactgta
taacagctggttgctccatgaacctatgttcaagtcagtactgggccacatccaaaacag
ttattattgcgtttacgttcttatttgcaataatgttgtcactaaagcttctctggaaag
ctaaccgtctagcattgatagatgctgcaatcatatttttatttgatatttcatcaagca
taatctcgtattatgttattaaaatcaataacggtgggccaattacagcagcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGCCGTGACATTGATGATTAC 572 385 284 Antisense
GCTACCGTGTCAAATTCCAGGCAGT 338 303 356 Antisense
CAGGCAGTTTTTACACCTATTTTCT 473 207 373 Antisense
CTACCGCCCACTTATATCAAACTTG 460 223 405 Antisense
GTTGGCTACGGACTATTTGACTATT 117 435 448 Antisense
TATGCGCTTTTTGTGCGATTTCAAG 517 657 477 Antisense
GTAATTCCCACTAACTGTATAACAG 418 461 505 Antisense
ACAGCTGGTTGCTCCATGAACCTAT 298 109 526 Antisense
GTCAGTACTGGGCCACATCCAAAAC 310 465 557 Antisense
ATGTTGTCACTAAAGCTTCTCTGGA 465 47 616 Antisense
ACGGTGGGCCAATTACAGCAGCTTT 672 95 734 Antisense
Sequence Source Affymetrix Proprietary Database