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[184191_at]

Description R09B5.9 /REP_DB=WormBase Gene ID /WP=CE12634 /TR=O44613 /GB=AAB94216.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_high_8_8 > 40      6grp_highest_nonorm > 01      6grp_total > 07      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 683.7
(3)
P 		196.2
(-2.5)
P 		189.6
(-2.6)
P 		150.4
(-3)
A 		533
B 622.1
(3)
P 		301.2
(-1.4)
P 		245
(-2.1)
P 		181.3
(-3)
P 		441
C 638.2
(3)
P 		289.5
(-2.3)
P 		240.7
(-3)
P 		261.1
(-2.7)
M 		398
avr 648
(3) 		262.3
(-2.1) 		225.1
(-2.6) 		197.6
(-3) 		450

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2621
1 2 3 4 5 6 range
A 2746.4
(3)
P 		1314.4
(-1.3)
P 		1872
(0.4)
P 		1566.3
(-0.6)
P 		760.4
(-3)
P 		1737.6
(-0)
P 		1986
B 3381.8
(3)
P 		1724
(-1.7)
P 		1807.7
(-1.4)
P 		1735.6
(-1.6)
P 		1256.5
(-3)
P 		1902.9
(-1.2)
P 		2125
C 3300
(3)
P 		1637.1
(-1.3)
P 		1705.7
(-1.1)
P 		1691.3
(-1.2)
P 		992.1
(-3)
P 		1934.6
(-0.5)
P 		2308
avr 3142.7
(3) 		1558.5
(-1.4) 		1795.1
(-0.8) 		1664.4
(-1.1) 		1003
(-3) 		1858.4
(-0.6) 		2140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 248.9
(3)
P 		42.6
(-2.5)
P 		49.6
(-2.3)
P 		22
(-3)
A 		227
B 198.4
(3)
P 		74.4
(-1.7)
P 		56.8
(-2.3)
P 		38.6
(-3)
P 		160
C 211.3
(3)
P 		83.2
(-1.6)
P 		83.9
(-1.6)
P 		44
(-3)
M 		167
avr 219.5
(3) 		66.7
(-2) 		63.4
(-2.1) 		34.9
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 994
1 2 3 4 5 6 range
A 506.3
(3)
P 		467.5
(2.2)
P 		407.7
(0.9)
P 		397.2
(0.6)
P 		229.4
(-3)
P 		423.1
(1.2)
P 		277
B 1176.7
(3)
P 		573.8
(-1.9)
P 		439
(-3)
P 		459.7
(-2.8)
P 		510.5
(-2.4)
P 		709.6
(-0.8)
P 		738
C 1223.2
(3)
P 		499.5
(-1.8)
P 		434.1
(-2.2)
P 		340.1
(-2.9)
P 		321
(-3)
P 		647.6
(-0.8)
P 		902
avr 968.7
(3) 		513.6
(-1.4) 		426.9
(-2.3) 		399
(-2.6) 		353.6
(-3) 		593.4
(-0.7) 		615
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14824
Sequence Type Exemplar sequence
Representative Public ID R09B5.9 NCBI
Target Description R09B5.9 /REP_DB=WormBase Gene ID /WP=CE12634 /TR=O44613 /GB=AAB94216.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071015 NCBI Caenorhabditis elegans CaeNaCin (Caenorhabditis bacteriocin) family member (cnc-4) (cnc-4) mRNA, complete cds. 11/11 None
SNAP00000025906 ENSEMBL cdna:SNAP chromosome:CEL140:V:1447094:1447372:1 11/11 None
GENEFINDER00000025919 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1447094:1448453:1 11/11 None
R09B5.9 ENSEMBL cdna:known chromosome:CEL140:V:1447046:1447479:1 gene:R09B5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1447093-1447372(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cnc-4
Ensembl R09B5.9
Entrez Gene 178635 Entrez gene
SwissProt O44613 EMBL-EBI
WormBase CE12634 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503416.1 2 5-23,43-65
R09B5.9 2 5-23,43-65
SNAP00000025906 2 5-23,43-65
GENEFINDER00000025919 3 5-23,38-60,138-160
Sequence
Target Sequence 
>C. ELEGANS:184191_AT
gtccttcttgtcgctattattgccatgtcttctgcacaatggggctacggtccatatggc
gggtatggtggtggataccctggaatgtatggcggatacggtatgcgtccatatggaatg
tacggtggctacggaatgggaatgtaccgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTTCTTGTCGCTATTATTGCCA 664 475 31 Antisense
TGTCGCTATTATTGCCATGTCTTCT 590 557 39 Antisense
ATTATTGCCATGTCTTCTGCACAAT 599 13 46 Antisense
TCTTCTGCACAATGGGGCTACGGTC 288 607 58 Antisense
GGCTACGGTCCATATGGCGGGTATG 211 537 73 Antisense
GCGGGTATGGTGGTGGATACCCTGG 71 285 89 Antisense
GTATGGCGGATACGGTATGCGTCCA 241 455 117 Antisense
GGCGGATACGGTATGCGTCCATATG 379 541 121 Antisense
CGTCCATATGGAATGTACGGTGGCT 226 245 136 Antisense
GAATGTACGGTGGCTACGGAATGGG 129 333 146 Antisense
GCTACGGAATGGGAATGTACCGCCC 704 293 158 Antisense
Sequence Source Affymetrix Proprietary Database