[Home] | [Total List]

[184190_at]

Description C01G12.1 /REP_DB=WormBase Gene ID /WP=CE15571 /TR=O45233 /GB=CAB03812.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_total > 92      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 303.4
(3)
P 		295.6
(2.7)
P 		240.1
(0.2)
P 		169
(-3)
P 		134
B 277.7
(1.1)
P 		329.4
(3)
P 		261
(0.5)
P 		162.3
(-3)
P 		167
C 317.2
(1.7)
P 		356.6
(3)
P 		302
(1.2)
P 		178.9
(-3)
P 		178
avr 299.4
(1.9) 		327.2
(3) 		267.7
(0.7) 		170.1
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 236.1
(-0)
P 		251.9
(0.3)
P 		189.2
(-1.1)
P 		241.6
(0.1)
P 		370
(3)
P 		103
(-3)
A 		267
B 231.8
(-0.2)
P 		221.9
(-0.4)
P 		177.5
(-1.4)
P 		273
(0.8)
P 		371.9
(3)
P 		105.3
(-3)
P 		267
C 304.8
(0.7)
P 		327.9
(1.1)
P 		165
(-1.8)
P 		249.7
(-0.3)
P 		439.8
(3)
P 		93.7
(-3)
P 		346
avr 257.6
(0.2) 		267.2
(0.4) 		177.2
(-1.4) 		254.8
(0.2) 		393.9
(3) 		100.7
(-3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 110.5
(3)
P 		64.2
(-0.2)
P 		62.8
(-0.3)
P 		24.7
(-3)
P 		86
B 88.6
(3)
P 		81.4
(2.2)
P 		60.5
(-0.1)
P 		34.6
(-3)
P 		54
C 105
(3)
P 		102.5
(2.8)
P 		105.2
(3)
P 		30.2
(-3)
P 		75
avr 101.4
(3) 		82.7
(1.4) 		76.2
(0.9) 		29.8
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 43.5
(-1.7)
P 		89.6
(1.5)
P 		41.2
(-1.9)
P 		61.3
(-0.5)
P 		111.7
(3)
P 		25.1
(-3)
A 		87
B 80.7
(-0.8)
P 		73.9
(-1.1)
P 		43.1
(-2.8)
P 		72.3
(-1.2)
P 		151.1
(3)
P 		39.3
(-3)
P 		112
C 113
(1.4)
P 		100.1
(0.7)
P 		42
(-2.4)
P 		50.2
(-2)
P 		142.3
(3)
P 		31.4
(-3)
P 		111
avr 79.1
(-0.3) 		87.9
(0.3) 		42.1
(-2.4) 		61.3
(-1.3) 		135
(3) 		31.9
(-3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2664
Sequence Type Exemplar sequence
Representative Public ID C01G12.1 NCBI
Target Description C01G12.1 /REP_DB=WormBase Gene ID /WP=CE15571 /TR=O45233 /GB=CAB03812.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064627 NCBI Caenorhabditis elegans C01G12.1 (C01G12.1) mRNA, complete cds. 11/11 None
SNAP00000024261 ENSEMBL cdna:SNAP chromosome:CEL140:II:14573537:14576016:1 11/11 None
GENEFINDER00000024276 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14573537:14576016:1 11/11 None
C01G12.1 ENSEMBL cdna:known chromosome:CEL140:II:14573506:14576408:1 gene:C01G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14573533-14576013(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G12.1
Entrez Gene 175118 Entrez gene
SwissProt O45233 EMBL-EBI
WormBase CE15571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03812 Hypothetical protein C01G12.1 [Caenorhabditis elegans] ref|NP_497028.1| C01G12.1 [Caenorhabditis elegans] 0.0
blast CAE73415 Hypothetical protein CBG20858 [Caenorhabditis briggsae] 1.0E-142
blast CAE73415 Hypothetical protein CBG20858 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:184190_AT
gctcagagccaacagcagactcagcaggctcaacaggtccagcaggtccaacagacccca
cagaaaccatcagtggagtccctcatagcagcgaatcaggctagatttgcacaccatctt
gctgcacagctcactgggatgagttcaatgctcaatggagccaggaaatccgaggaggca
gcgatcccgccgctccgaccttcaacaccaccgccaaccgcgtccactacgagccacttc
catccttataaagaggcggcgaggaataggcataggcagcagactgcggataatgttatg
agatatcatttgcaacaggtcggtcgggttgctcttgaatggctcaatgatgaggattta
ttgtacagccggataattgggttgaagcttaagaaaatggacccgaaaaaacggaaaaag
gtccgtcaccaaataatgtcactactggacgaaaccgatgacacccaccatattgtagac
aatgatgactcttgtagcagtccatcagcacatagtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAGAGCCAACAGCAGACTCAGC 536 301 703 Antisense
GAAACCATCAGTGGAGTCCCTCATA 279 359 765 Antisense
GTCCCTCATAGCAGCGAATCAGGCT 370 475 780 Antisense
GCTAGATTTGCACACCATCTTGCTG 70 301 802 Antisense
ATCTTGCTGCACAGCTCACTGGGAT 25 31 818 Antisense
GAAATCCGAGGAGGCAGCGATCCCG 150 363 867 Antisense
GAGCCACTTCCATCCTTATAAAGAG 555 383 933 Antisense
ATCATTTGCAACAGGTCGGTCGGGT 372 23 1007 Antisense
AGGTCCGTCACCAAATAATGTCACT 115 57 1121 Antisense
GATGACACCCACCATATTGTAGACA 610 411 1159 Antisense
TAGCAGTCCATCAGCACATAGTCCA 383 651 1197 Antisense
Sequence Source Affymetrix Proprietary Database