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[184189_at]

Description Y94A7B.6 /REP_DB=WormBase Gene ID /WP=CE26311 /TR=Q9XXB3 /GB=CAA19562.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 02      6grp_cgc > 19      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 2.9
(-3)
A 		6.6
(-2.8)
A 		9.3
(-2.7)
A 		115.8
(3)
P 		113
B 5.9
(-3)
A 		10.5
(-2.8)
A 		5.2
(-3)
A 		154.3
(3)
P 		149
C 5.7
(-2.9)
A 		3.5
(-3)
A 		6.7
(-2.9)
A 		221.2
(3)
P 		218
avr 4.8
(-3) 		6.9
(-2.9) 		7.1
(-2.9) 		163.8
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 16.8
(3)
A 		5.9
(-1.7)
A 		2.8
(-3)
A 		7.8
(-0.9)
A 		10.8
(0.4)
A 		10.5
(0.3)
A 		14
B 4.1
(-3)
A 		11.2
(-1.8)
A 		7.7
(-2.4)
A 		33.9
(1.8)
A 		8.3
(-2.3)
A 		41.1
(3)
A 		37
C 2.1
(-3)
A 		50.2
(3)
A 		3.2
(-2.9)
A 		9.2
(-2.1)
A 		2.7
(-2.9)
A 		22.7
(-0.4)
A 		48
avr 7.7
(-2.1) 		22.4
(2.3) 		4.6
(-3) 		17
(0.7) 		7.3
(-2.2) 		24.8
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.1
(-3)
A 		1.4
(-2.9)
A 		2.4
(-2.5)
A 		17
(3)
P 		16
B 1.9
(-2.9)
A 		2.6
(-2.7)
A 		1.2
(-3)
A 		32.9
(3)
P 		32
C 1.9
(-2.9)
A 		1
(-3)
A 		2.3
(-2.8)
A 		37.3
(3)
P 		36
avr 1.6
(-3) 		1.7
(-3) 		2
(-2.9) 		29.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.1
(2.8)
A 		2.1
(0.5)
A 		0.6
(-3)
A 		2
(0.2)
A 		3.2
(3)
A 		2.6
(1.6)
A 		3
B 1.4
(-3)
A 		3.7
(-2)
A 		1.9
(-2.8)
A 		9
(0.3)
A 		3.4
(-2.1)
A 		15.3
(3)
A 		14
C 0.8
(-3)
A 		15.3
(3)
A 		0.8
(-3)
A 		1.9
(-2.5)
A 		0.9
(-3)
A 		7.6
(-0.2)
A 		15
avr 1.8
(-2.4) 		7
(1.8) 		1.1
(-3) 		4.3
(-0.4) 		2.5
(-1.9) 		8.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13654
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.6 NCBI
Target Description Y94A7B.6 /REP_DB=WormBase Gene ID /WP=CE26311 /TR=Q9XXB3 /GB=CAA19562.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075098 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-300) (srh-300) mRNA, complete cds. 11/11 None
SNAP00000042696 ENSEMBL cdna:SNAP chromosome:CEL140:V:17824804:17826465:1 11/11 None
GENEFINDER00000042699 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17821580:17826465:1 11/11 None
Y94A7B.6 ENSEMBL cdna:known chromosome:CEL140:V:17824681:17826465:1 gene:Y94A7B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17824680-17826465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-300
Ensembl Y94A7B.6
Entrez Gene 190795 Entrez gene
SwissProt Q9XXB3 EMBL-EBI
WormBase CE26311 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-166
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-134
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-108
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 9.0E-97
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 7.0E-95
blast CAA19567 Hypothetical protein Y94A7B.5 [Caenorhabditis elegans] ref|NP_507498.1| Serpentine Receptor, class H family member (srh-298) [Caenorhabditis elegans] 4.0E-93
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 5.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.3E-33
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-90
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507499.1 7 15-35,48-70,80-102,130-152,198-215,244-266,276-298
Y94A7B.6 7 15-35,48-70,80-102,130-152,198-215,244-266,276-298
SNAP00000042696 6 7-29,39-61,123-145,191-208,237-259,269-291
GENEFINDER00000042699 9 44-66,79-101,139-161,191-213,223-242,282-304,350-367,396-418,428-450
Sequence
Target Sequence 
>C. ELEGANS:184189_AT
tggagatatctacgttaccctttccttattttaaactacacgctcgtacttgcctattgc
attccagtatatctagatgttccggaagatcaggaaaatgccaagcgtgtcatgttcgag
atgtatcctcaagcctgtgaacttgtcgtctccaagtctgttatatttgtgatgacgctt
ggtgatgattattggtcgaacttacgggaaaatgctctgacagtgttggtgttagtggag
attgttgtcttcgttgtagtgataagggtgaaaatgaatagagctacaaaggatattcaa
acatcaatatcacgtgatacatttcacaagcataggatgttcataagagccttgaatctt
aagatcgctattccgattgcgatcatcttcatcccggcggtctttggtgcgtatctagct
tcacaagattccgttcaacaaggtgttgataacttactgaacactgtaacatcactccat
ggattatcagctacgattctgatgatatatctgcaaaaaccatatcgtgaagtgttcctg
gcagtggttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGATATCTACGTTACCCTTTCC 631 549 394 Antisense
TAAACTACACGCTCGTACTTGCCTA 545 627 425 Antisense
CTCGTACTTGCCTATTGCATTCCAG 434 229 436 Antisense
ATGCCAAGCGTGTCATGTTCGAGAT 227 41 491 Antisense
GATGTATCCTCAAGCCTGTGAACTT 638 409 513 Antisense
TGTCGTCTCCAAGTCTGTTATATTT 339 557 537 Antisense
ATTCCGATTGCGATCATCTTCATCC 196 9 763 Antisense
GGTCTTTGGTGCGTATCTAGCTTCA 493 503 792 Antisense
TAGCTTCACAAGATTCCGTTCAACA 608 647 809 Antisense
GAACACTGTAACATCACTCCATGGA 702 351 852 Antisense
GAAGTGTTCCTGGCAGTGGTTCTTC 585 335 922 Antisense
Sequence Source Affymetrix Proprietary Database