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[184188_at]

Description Y37A1B.6 /REP_DB=WormBase Gene ID /WP=CE19076 /TR=Q9XXG6 /GB=CAA19483.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 12.9
(-3)
A 		24.5
(-2.3)
A 		14.8
(-2.9)
A 		109.8
(3)
A 		97
B 40.5
(2.7)
A 		3.1
(-3)
A 		42.6
(3)
A 		28.3
(0.8)
A 		40
C 6
(-3)
A 		17.9
(-0.6)
A 		19.7
(-0.2)
A 		35.3
(3)
P 		29
avr 19.8
(-2.4) 		15.2
(-3) 		25.7
(-1.5) 		57.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22.6
(-0.1)
A 		5.4
(-3)
A 		40.5
(3)
A 		37.8
(2.5)
A 		16.6
(-1.1)
A 		34.8
(2)
A 		35
B 17.6
(-0.7)
A 		39.9
(3)
A 		16.8
(-0.8)
A 		3.8
(-3)
A 		18.4
(-0.6)
A 		23.2
(0.2)
A 		36
C 4.8
(-3)
A 		26.3
(3)
A 		8.3
(-2)
A 		24.3
(2.4)
A 		8.2
(-2.1)
A 		6.2
(-2.6)
A 		22
avr 15
(-2.6) 		23.9
(3) 		21.9
(1.7) 		22
(1.8) 		14.4
(-3) 		21.4
(1.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.7
(-2.6)
A 		5.3
(-2.3)
A 		3.9
(-3)
A 		16.1
(3)
A 		12
B 12.9
(3)
A 		0.8
(-3)
A 		9.9
(1.5)
A 		6
(-0.4)
A 		12
C 2
(-3)
A 		5.1
(0.8)
A 		6.9
(3)
A 		6
(1.9)
P 		5
avr 6.5
(-0.1) 		3.7
(-3) 		6.9
(0.4) 		9.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.2
(-1.2)
A 		1.9
(-3)
A 		8.8
(2.4)
A 		9.6
(3)
A 		5
(-0.6)
A 		8.5
(2.1)
A 		8
B 6.1
(-0.5)
A 		13.3
(3)
A 		4.1
(-1.5)
A 		1
(-3)
A 		7.5
(0.2)
A 		8.6
(0.7)
A 		12
C 1.8
(-3)
A 		8
(3)
A 		2.1
(-2.7)
A 		4.9
(0)
A 		2.6
(-2.2)
A 		2.1
(-2.7)
A 		6
avr 4
(-3) 		7.7
(3) 		5
(-1.4) 		5.2
(-1.1) 		5
(-1.4) 		6.4
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8640
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.6 NCBI
Target Description Y37A1B.6 /REP_DB=WormBase Gene ID /WP=CE19076 /TR=Q9XXG6 /GB=CAA19483.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070288 NCBI Caenorhabditis elegans Y37A1B.6 (Y37A1B.6) mRNA, complete cds. 11/11 None
Y37A1B.6 ENSEMBL cdna:known chromosome:CEL140:IV:14038590:14039388:-1 gene:Y37A1B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14038595-14039394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.6
Entrez Gene 189601 Entrez gene
SwissProt Q9XXG6 EMBL-EBI
WormBase CE19076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19483 Hypothetical protein Y37A1B.6 [Caenorhabditis elegans] ref|NP_502689.1| Y37A1B.6 [Caenorhabditis elegans] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:184188_AT
gcacctctgtcccaaagtttgaaaattgaatttttgaagtttccgtcaattttttattac
tgtttcatgttgcattattttgggaaaaatatgttcaactcaaattttgctgacattcat
aatacatttctaatggtggcttcatttgaacaattcgttctcgaaggatattattcaatt
gacagggcatccaactttccagaaaatttatactttcacagtgtaacaggaaaaattgtt
cacaaacctcatagtttagtgagcctccaacacacacataaatacatggcacaagcacct
ccgtccaaaagtcttcgttcagtttttgttggaaatcattcgagagtagtaaaaacacac
gacatcaacattttccagattctggccggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCTCTGTCCCAAAGTTTGAAAA 204 315 22 Antisense
TTATTACTGTTTCATGTTGCATTAT 14 679 75 Antisense
AACTCAAATTTTGCTGACATTCATA 505 139 118 Antisense
ACATTTCTAATGGTGGCTTCATTTG 389 101 145 Antisense
TTGACAGGGCATCCAACTTTCCAGA 9 705 200 Antisense
AAATTGTTCACAAACCTCATAGTTT 342 115 254 Antisense
GTTTAGTGAGCCTCCAACACACACA 313 449 275 Antisense
TAAATACATGGCACAAGCACCTCCG 332 641 300 Antisense
CTCCGTCCAAAAGTCTTCGTTCAGT 307 235 320 Antisense
AACACACGACATCAACATTTTCCAG 481 135 375 Antisense
ACATTTTCCAGATTCTGGCCGGCTT 590 105 389 Antisense
Sequence Source Affymetrix Proprietary Database