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[184187_at]

Description T09E11.8 /REP_DB=WormBase Gene ID /WP=CE13511 /TR=O02308 /GB=CAB03535.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.3
(-3)
A 		4.8
(3)
A 		2.9
(-1.6)
A 		3.6
(0.1)
A 		3
B 3.6
(-0.7)
A 		6.5
(3)
A 		2.3
(-2.4)
A 		1.8
(-3)
A 		5
C 3
(-2.3)
A 		11.6
(2.4)
A 		1.6
(-3)
A 		12.8
(3)
A 		11
avr 3
(-2.2) 		7.6
(3) 		2.3
(-3) 		6.1
(1.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.5
(1.9)
A 		5.7
(-0.6)
A 		2.9
(-3)
A 		7.2
(0.7)
A 		9.8
(3)
A 		9.3
(2.6)
A 		7
B 2.8
(-2.3)
A 		5.2
(0.3)
A 		7.7
(3)
A 		2.1
(-3)
A 		4.9
(0)
A 		5.6
(0.8)
A 		6
C 3.2
(-2)
A 		1.9
(-2.7)
A 		1.4
(-3)
A 		11.8
(3)
A 		1.7
(-2.8)
A 		7.4
(0.5)
A 		10
avr 4.8
(-1.6) 		4.3
(-2.5) 		4
(-3) 		7
(2.3) 		5.5
(-0.4) 		7.4
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.8
(0.6)
A 		1
(3)
A 		0.8
(0.6)
A 		0.5
(-3)
A 		1
B 1.2
(1)
A 		1.6
(3)
A 		0.5
(-2.5)
A 		0.4
(-3)
A 		1
C 1
(-2.1)
A 		3.3
(3)
A 		0.6
(-3)
A 		2.2
(0.6)
A 		3
avr 1
(-1.3) 		2
(3) 		0.6
(-3) 		1
(-1.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.6
(-0.5)
A 		2
(0.5)
A 		0.6
(-3)
A 		1.8
(0)
A 		3
(3)
A 		2.3
(1.3)
A 		2
B 1
(-1.1)
A 		1.7
(1.5)
A 		1.9
(2.3)
A 		0.5
(-3)
A 		2
(2.6)
A 		2.1
(3)
A 		2
C 1.2
(-0.7)
A 		0.6
(-2.4)
A 		0.4
(-3)
A 		2.4
(2.7)
A 		0.6
(-2.4)
A 		2.5
(3)
A 		2
avr 1.3
(-1.6) 		1.4
(-1.2) 		1
(-3) 		1.6
(-0.2) 		1.9
(1.2) 		2.3
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2022
Sequence Type Exemplar sequence
Representative Public ID T09E11.8 NCBI
Target Description T09E11.8 /REP_DB=WormBase Gene ID /WP=CE13511 /TR=O02308 /GB=CAB03535.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060725 NCBI Caenorhabditis elegans T09E11.8 (T09E11.8) mRNA, complete cds. 11/11 None
GENEFINDER00000042475 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12358814:12376741:1 11/11 None
T09E11.8 ENSEMBL cdna:known chromosome:CEL140:I:12359062:12360846:1 gene:T09E11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042464 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12358992-12360777(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.8
Entrez Gene 188336 Entrez gene
SwissProt O02308 EMBL-EBI
WormBase CE13511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03535 Hypothetical protein T09E11.8 [Caenorhabditis elegans] ref|NP_493126.1| T09E11.8 [Caenorhabditis elegans] 0.0
blast CAB03533 Hypothetical protein T09E11.4 [Caenorhabditis elegans] ref|NP_493129.2| T09E11.4 [Caenorhabditis elegans] 0.0
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 0.0
blast NP_499906 F18F11.4 [Caenorhabditis elegans] gb|AAO91740.2| Hypothetical protein F18F11.4 [Caenorhabditis elegans] 1.0E-173
blast CAE65575 Hypothetical protein CBG10571 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.1E-83
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.1E-80
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.6E-94
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.4E-114
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.1E-112
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.8E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042475 30 538-560,572-589,609-631,638-660,708-725,730-747,801-818,825-842,852-874,881-903,913-930,1182-1199,1219-1241,1248-1270,1307-1329,1341-1363,1402-1421,1428-1447,1451-1473,1480-1502,1512-1529,1779-1796,1816-1838,1845-1867,1908-1930,1937-1954,2028-2047,2056-2075,2085-2107,2114-2135
Sequence
Target Sequence 
>C. ELEGANS:184187_AT
actcccagggacatgggcttcagtctagaatcagtgagggtgctgcaaaatgaaagtatt
cgatgggattaccgaacagccaagaagcttattcatcggccggaaagggttgttcacttc
gatatgcattccgtttttcaaaatgaggtggatagtgttaccaaaaatcaatactcaaca
atcgatctgctgggtagttctgacttgtactttttgcacttgagaagatttgaacagaaa
cttgtaactccccatgatgttttttataataatagattggatacaaatttattgctaaag
ttgaaggagcgaatgttagatcagtattcggaaaggatcaatgggactcggtttgcagat
acaatactatccccctggtccgaagatgcattaaatactatgcgagatctcgagcaatgc
cggtgtgaagcgttcggaacagttttgaaccacaaaaaccaaatatgccagcaaagttcc
gccgggtgtgagggcatgctgacttctggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCCAGGGACATGGGCTTCAGTC 39 99 904 Antisense
CCAAGAAGCTTATTCATCGGCCGGA 165 275 983 Antisense
GGTTGTTCACTTCGATATGCATTCC 134 509 1011 Antisense
ATCGATCTGCTGGGTAGTTCTGACT 17 37 1084 Antisense
GTTCTGACTTGTACTTTTTGCACTT 509 443 1100 Antisense
GAAACTTGTAACTCCCCATGATGTT 368 355 1140 Antisense
TGCAGATACAATACTATCCCCCTGG 116 577 1257 Antisense
TCCCCCTGGTCCGAAGATGCATTAA 698 595 1273 Antisense
GCGAGATCTCGAGCAATGCCGGTGT 101 289 1305 Antisense
GCAAAGTTCCGCCGGGTGTGAGGGC 555 317 1374 Antisense
TGTGAGGGCATGCTGACTTCTGGGA 360 555 1390 Antisense
Sequence Source Affymetrix Proprietary Database