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[184185_at]

Description C49C3.11 /REP_DB=WormBase Gene ID /WP=CE19750 /TR=Q9XUG2 /GB=CAB05156.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 6.4
(-2.8)
A 		4.7
(-3)
A 		60
(2.1)
A 		69.2
(3)
A 		65
B 26.8
(-1.4)
A 		33.3
(1.8)
A 		23.6
(-3)
A 		35.7
(3)
A 		12
C 2.7
(-3)
A 		14.5
(-2.4)
A 		27.5
(-1.8)
A 		121.8
(3)
A 		119
avr 12
(-3) 		17.5
(-2.5) 		37
(-0.6) 		75.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 9.9
(-2.2)
A 		5.2
(-3)
A 		17
(-1.1)
A 		24.3
(0.1)
A 		28.1
(0.8)
A 		41.8
(3)
A 		37
B 16.4
(-3)
A 		25.1
(-0.4)
A 		20.2
(-1.9)
A 		20.3
(-1.9)
A 		30.9
(1.3)
A 		36.8
(3)
A 		20
C 26.8
(0.8)
A 		3.9
(-3)
A 		32.7
(1.7)
A 		6
(-2.7)
A 		40.5
(3)
A 		32.8
(1.7)
A 		37
avr 17.7
(-1.5) 		11.4
(-3) 		23.3
(-0.2) 		16.9
(-1.7) 		33.2
(2.1) 		37.1
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.3
(-2.5)
A 		1
(-3)
A 		15.7
(3)
A 		10.1
(0.7)
A 		15
B 8.6
(3)
A 		8.2
(2.2)
A 		5.5
(-3)
A 		7.6
(1.1)
A 		3
C 0.9
(-3)
A 		4.2
(-2)
A 		9.6
(-0.3)
A 		20.5
(3)
A 		20
avr 3.9
(-3) 		4.5
(-2.6) 		10.3
(1.4) 		12.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.8
(-3)
A 		1.8
(-3)
A 		3.7
(-1.6)
A 		6.2
(0.1)
A 		8.5
(1.8)
A 		10.2
(3)
A 		8
B 5.7
(-2.5)
A 		8.4
(-0.6)
A 		4.9
(-3)
A 		5.4
(-2.7)
A 		12.5
(2.2)
A 		13.7
(3)
A 		9
C 9.9
(1.4)
A 		1.2
(-3)
A 		8.3
(0.6)
A 		1.2
(-3)
A 		13.1
(3)
A 		11
(1.9)
A 		12
avr 5.8
(-1.5) 		3.8
(-3) 		5.6
(-1.6) 		4.3
(-2.6) 		11.4
(2.8) 		11.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8410
Sequence Type Exemplar sequence
Representative Public ID C49C3.11 NCBI
Target Description C49C3.11 /REP_DB=WormBase Gene ID /WP=CE19750 /TR=Q9XUG2 /GB=CAB05156.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070688 NCBI Caenorhabditis elegans C49C3.11 (C49C3.11) mRNA, complete cds. 11/11 None
SNAP00000040201 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17343762:17344714:1 9/11 None
GENEFINDER00000040209 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17343013:17344714:1 11/11 None
C49C3.11 ENSEMBL cdna:known chromosome:CEL140:IV:17343013:17344760:1 gene:C49C3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17343018-17344720(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C3.11
Entrez Gene 178520 Entrez gene
SwissProt Q9XUG2 EMBL-EBI
WormBase CE19750 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7582 physiological process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
5615 extracellular space inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
5386 carrier activity inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05156 Hypothetical protein C49C3.11 [Caenorhabditis elegans] ref|NP_503089.1| C49C3.11 [Caenorhabditis elegans] 0.0
blast CAE57432 Hypothetical protein CBG00393 [Caenorhabditis briggsae] 1.0E-92
blast CAB05156 Hypothetical protein C49C3.11 [Caenorhabditis elegans] ref|NP_503089.1| C49C3.11 [Caenorhabditis elegans] 3.0E-90
blast CAE57432 Hypothetical protein CBG00393 [Caenorhabditis briggsae] 6.0E-36
blast CAE57433 Hypothetical protein CBG00394 [Caenorhabditis briggsae] 6.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503089.1 1 70-92
C49C3.11 1 70-92
GENEFINDER00000040209 1 70-92
Sequence
Target Sequence 
>C. ELEGANS:184185_AT
gatggtgcttgaagtacttccctggaaatacaacattcgaagaggccgagaaaatttgca
gatgtcaaggaggagcatcactctctggaattgaaaatatgaaagagttgacttgggtta
ttgtccaagccaaggcttcgtttgctgaagaaggaatccaaacaggaggaatttgggtcg
gagcgtaccgtcgcaaagcgtgctgggataaaaagaacttgaacaaaaccgagtgctcaa
aagagcttcaataccagtggaccgatagaaatactgttggaaatctgatgtggaagaaga
gatggactgcgggagcaccacatgacaatactgttggagatcaccacgagtattgcgtcc
agcttcaagtcaccgtcgacccagctttggcgaataagaacctcactggatttttcgata
acagagtatgtgtgaacccagctgctgaaaatcaattcccatcagaaggattcctttgtg
gacgtccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTGCTTGAAGTACTTCCCTGG 27 407 650 Antisense
AGGAGGAGCATCACTCTCTGGAATT 581 55 717 Antisense
CCAAGCCAAGGCTTCGTTTGCTGAA 92 273 774 Antisense
GAATTTGGGTCGGAGCGTACCGTCG 703 321 818 Antisense
CGTACCGTCGCAAAGCGTGCTGGGA 689 243 833 Antisense
AAAGAGCTTCAATACCAGTGGACCG 245 115 889 Antisense
ACTGCGGGAGCACCACATGACAATA 689 97 955 Antisense
GATCACCACGAGTATTGCGTCCAGC 264 421 988 Antisense
CGTCGACCCAGCTTTGGCGAATAAG 516 245 1023 Antisense
AGAGTATGTGTGAACCCAGCTGCTG 63 69 1072 Antisense
GAAGGATTCCTTTGTGGACGTCCAC 610 333 1114 Antisense
Sequence Source Affymetrix Proprietary Database