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[184184_at]

Description T04C12.2 /REP_DB=WormBase Gene ID /WP=CE13144 /TR=O02296 /GB=CAB04680.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 12
(-0.5)
A 		17.7
(3)
A 		7.9
(-3)
A 		15.8
(1.8)
A 		10
B 27.6
(1.9)
A 		4.7
(-3)
A 		6.5
(-2.6)
A 		32.7
(3)
A 		28
C 5.2
(-2.9)
A 		6.6
(-2.5)
A 		4.6
(-3)
A 		30.4
(3)
A 		26
avr 14.9
(-0.4) 		9.7
(-2) 		6.3
(-3) 		26.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 4.5
(-2.8)
A 		12.4
(1.1)
A 		10.7
(0.2)
A 		16.3
(3)
A 		4.1
(-3)
A 		5
(-2.6)
A 		12
B 9.4
(-1.9)
A 		39.5
(3)
A 		2.4
(-3)
A 		5.5
(-2.5)
A 		4
(-2.7)
A 		3.3
(-2.9)
A 		37
C 3.9
(-3)
A 		61.7
(3)
A 		17
(-1.6)
A 		4.8
(-2.9)
A 		3.5
(-3)
A 		29.3
(-0.3)
A 		58
avr 5.9
(-2.6) 		37.9
(3) 		10
(-1.9) 		8.9
(-2.1) 		3.9
(-3) 		12.5
(-1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.4
(3)
A 		3.8
(1.4)
A 		2.1
(-3)
A 		2.3
(-2.5)
A 		2
B 8.8
(3)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		7
(1.6)
A 		8
C 1.7
(-2.8)
A 		1.9
(-2.5)
A 		1.6
(-3)
A 		5.1
(3)
A 		4
avr 5
(3) 		2.3
(-1.9) 		1.7
(-3) 		4.8
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		4.4
(3)
A 		2.3
(-0.5)
A 		4.1
(2.5)
A 		1.2
(-2.3)
A 		1.2
(-2.3)
A 		4
B 3.3
(-1.7)
A 		13.1
(3)
A 		0.6
(-3)
A 		1.4
(-2.6)
A 		1.6
(-2.5)
A 		1.2
(-2.7)
A 		13
C 1.5
(-2.8)
A 		18.8
(3)
A 		4.3
(-1.9)
A 		1
(-3)
A 		1.1
(-3)
A 		9.8
(-0)
A 		18
avr 1.9
(-2.7) 		12.1
(3) 		2.4
(-2.4) 		2.2
(-2.5) 		1.3
(-3) 		4.1
(-1.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13196
Sequence Type Exemplar sequence
Representative Public ID T04C12.2 NCBI
Target Description T04C12.2 /REP_DB=WormBase Gene ID /WP=CE13144 /TR=O02296 /GB=CAB04680.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028928(11), NM_001028929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028928 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-75) (srh-75) mRNA, complete cds. 11/11 None
NM_001028929 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-75) (srh-75) mRNA, complete cds. 11/11 None
T04C12.2b ENSEMBL cdna:known chromosome:CEL140:V:11058385:11059731:-1 gene:T04C12.2 11/11 None
T04C12.2a ENSEMBL cdna:known chromosome:CEL140:V:11058385:11059731:-1 gene:T04C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11058384-11059731(-) 100.0 100.0
Public Domain and Genome References
Ensembl T04C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04680 Hypothetical protein T04C12.2a [Caenorhabditis elegans] ref|NP_001024099.1| Serpentine Receptor, class H family member (srh-75) [Caenorhabditis elegans] 0.0
blast CAE53738 Hypothetical protein T04C12.2b [Caenorhabditis elegans] ref|NP_001024100.1| Serpentine Receptor, class H family member (srh-75) [Caenorhabditis elegans] 1.0E-160
blast CAE53738 Hypothetical protein T04C12.2b [Caenorhabditis elegans] ref|NP_001024100.1| Serpentine Receptor, class H family member (srh-75) [Caenorhabditis elegans] 1.0E-155
blast CAB04680 Hypothetical protein T04C12.2a [Caenorhabditis elegans] ref|NP_001024099.1| Serpentine Receptor, class H family member (srh-75) [Caenorhabditis elegans] 1.0E-155
blast CAE75160 Hypothetical protein CBG23097 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-4
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024099.1 7 31-53,72-94,109-131,152-174,218-240,261-283,296-318
NP_001024100.1 6 43-65,75-95,116-138,182-204,225-247,260-282
T04C12.2b 6 43-65,75-95,116-138,182-204,225-247,260-282
T04C12.2a 7 31-53,72-94,109-131,152-174,218-240,261-283,296-318
Sequence
Target Sequence 
>C. ELEGANS:184184_AT
gtgcttaaagttccaacgtctgttcaagttcttataggatttatttctgctttgtttatg
gcaatctctcttgttgcattatttgaaaatcgaagtagtgccattcagaacaataaattc
agaattacaaaaaaacggtggaaattattatattattccgtgaattgctttattgtatta
gtttatctaattcctccatattgcaatgttccagaacaagagtcagctaaattgcatttg
ctgcaagcaattccatgcccgacagaggagtttttctactccgatgtttttgtttggaca
attgataaattttggataaactacctttggatgagtacagcaataatgatttcttcaaac
acaagaaaatttcaacgttctttctttttgggaacaattactcaggcagttgttccatta
atatttctactgctacccgtaataattggaattgtggttatttactgtgaatattataat
caagaactaaataactctttagtattatttttatcattgcatgggttcacttcaacattt
gtcattatacttgtacatcatccatatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTTAAAGTTCCAACGTCTGTTC 607 467 322 Antisense
TAGGATTTATTTCTGCTTTGTTTAT 352 655 356 Antisense
GCTTTGTTTATGGCAATCTCTCTTG 196 305 370 Antisense
CAATCTCTCTTGTTGCATTATTTGA 489 181 383 Antisense
TTAGTTTATCTAATTCCTCCATATT 462 681 499 Antisense
ATTCCTCCATATTGCAATGTTCCAG 645 7 511 Antisense
CCATGCCCGACAGAGGAGTTTTTCT 684 271 574 Antisense
TTTTCTACTCCGATGTTTTTGTTTG 68 675 593 Antisense
TTCCATTAATATTTCTACTGCTACC 245 699 734 Antisense
GCATGGGTTCACTTCAACATTTGTC 655 309 840 Antisense
TATACTTGTACATCATCCATATCGA 688 659 867 Antisense
Sequence Source Affymetrix Proprietary Database