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[184183_s_at]

Description R04B3.3 /REP_DB=WormBase Gene ID /WP=CE23890 /TR=Q21698 /GB=AAA91261.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 8.7
(-3)
A 		228.4
(3)
P 		209.4
(2.5)
A 		8.4
(-3)
A 		220
B 9.5
(-2.9)
A 		256.5
(2.3)
P 		289.1
(3)
P 		2.6
(-3)
A 		287
C 4
(-3)
A 		234.4
(3)
P 		221.3
(2.7)
P 		11.6
(-2.8)
A 		230
avr 7.4
(-3) 		239.8
(3) 		239.9
(3) 		7.5
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 48.1
(-3)
A 		158
(1.3)
A 		129.1
(0.1)
A 		202.5
(3)
A 		182.1
(2.2)
A 		94.5
(-1.2)
A 		154
B 93.1
(-1.3)
A 		182
(2.4)
A 		52.9
(-3)
A 		61.1
(-2.7)
A 		196.1
(3)
P 		86.4
(-1.6)
A 		143
C 85.4
(-2.5)
A 		187
(3)
A 		77
(-3)
A 		152.8
(1.1)
A 		167
(1.9)
A 		118.8
(-0.7)
A 		110
avr 75.5
(-3) 		175.7
(2.7) 		86.3
(-2.4) 		138.8
(0.6) 		181.7
(3) 		99.9
(-1.6) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.2
(-2.8)
A 		49.6
(2.4)
P 		54.8
(3)
A 		1.2
(-3)
A 		54
B 3
(-2.8)
A 		63.3
(2.7)
P 		67
(3)
P 		0.6
(-3)
A 		66
C 1.3
(-3)
A 		67.4
(2.2)
P 		77.1
(3)
P 		2
(-2.9)
A 		76
avr 2.5
(-2.9) 		60.1
(2.4) 		66.3
(3) 		1.3
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 8.9
(-3)
A 		56.2
(3)
A 		28.1
(-0.6)
A 		51.4
(2.4)
A 		55
(2.8)
A 		23
(-1.2)
A 		47
B 32.4
(-1.2)
A 		60.6
(1.3)
A 		12.8
(-3)
A 		16.2
(-2.7)
A 		79.7
(3)
P 		32.2
(-1.3)
A 		67
C 31.7
(-1.1)
A 		57.1
(3)
A 		19.6
(-3)
A 		30.7
(-1.2)
A 		54
(2.5)
A 		39.8
(0.2)
A 		38
avr 24.3
(-2.4) 		58
(2.3) 		20.2
(-3) 		32.8
(-1.2) 		62.9
(3) 		31.7
(-1.4) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184183_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18113
Sequence Type Exemplar sequence
Representative Public ID R04B3.3 NCBI
Target Description R04B3.3 /REP_DB=WormBase Gene ID /WP=CE23890 /TR=Q21698 /GB=AAA91261.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076048 NCBI Caenorhabditis elegans R04B3.3 (R04B3.3) mRNA, complete cds. 11/11 None
R04B3.3 ENSEMBL cdna:known chromosome:CEL140:X:2473776:2476007:-1 gene:R04B3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2473878-2475922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04B3.3
Entrez Gene 180551 Entrez gene
SwissProt Q21698 EMBL-EBI
WormBase CE23890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91261 Hypothetical protein R04B3.3 [Caenorhabditis elegans] ref|NP_508449.1| R04B3.3 [Caenorhabditis elegans] 0.0
blast CAE58872 Hypothetical protein CBG02103 [Caenorhabditis briggsae] 0.0
blast CAE58874 Hypothetical protein CBG02105 [Caenorhabditis briggsae] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:184183_S_AT
ctgtcgcacaacctgcagtggtgcaaactgctccgcaaaccccaatgacgtcagctgaat
cattatcaactgtcccatcactctttgaaagttgcttagcattgtcatgtaatccatctg
acttgagttgcaagttctggagatcatccggtaataaccgttgggaaattgggacgtccg
gacgggtggcaaatccgcttactggaattaatctgccacctggaacagctcaaaagttct
tggtcgcaccattcttcgactctcatatcagcagttacacactggtatcagaagccttaa
acgttccacttttggaggaagtttacttttgcttttatgagtattatgcaacagagggtc
tttcaattgcaatttgcactgacaaaatggattgtttctacaaaaagagtggcttgacta
tgggcgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTCGCACAACCTGCAGTGGTGCA 462 239 932 Antisense
GCAGTGGTGCAAACTGCTCCGCAAA 298 311 946 Antisense
GAATCATTATCAACTGTCCCATCAC 34 329 988 Antisense
AACTGTCCCATCACTCTTTGAAAGT 252 143 999 Antisense
TGTAATCCATCTGACTTGAGTTGCA 526 559 1039 Antisense
ACGGGTGGCAAATCCGCTTACTGGA 586 91 1113 Antisense
TAATCTGCCACCTGGAACAGCTCAA 312 631 1140 Antisense
AAAAGTTCTTGGTCGCACCATTCTT 222 133 1163 Antisense
CATTCTTCGACTCTCATATCAGCAG 461 215 1181 Antisense
TCAGAAGCCTTAAACGTTCCACTTT 133 321 1219 Antisense
GAGTGGCTTGACTATGGGCGAAGGA 621 401 1338 Antisense
Sequence Source Affymetrix Proprietary Database