[Home] | [Total List]

[184180_at]

Description F40H7.1 /REP_DB=WormBase Gene ID /WP=CE10198 /TR=O17097 /GB=AAF39801.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 12      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 50
(-1.6)
M 		36.4
(-2.5)
A 		28.5
(-3)
A 		121.9
(3)
P 		93
B 47.6
(3)
A 		39.2
(-3)
A 		42.2
(-0.9)
M 		41.6
(-1.3)
A 		8
C 40.9
(2.5)
A 		41.4
(2.9)
P 		33.9
(-3)
A 		41.5
(3)
A 		8
avr 46.2
(-1) 		39
(-2.3) 		34.9
(-3) 		68.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 79.8
(3)
M 		50.9
(-0.6)
P 		58.1
(0.3)
P 		60.6
(0.6)
P 		31
(-3)
A 		42.6
(-1.6)
A 		49
B 46.2
(0.8)
M 		46
(0.8)
A 		35.1
(-1.6)
A 		56
(2.9)
A 		56.5
(3)
A 		28.5
(-3)
A 		28
C 48.8
(0.9)
A 		62.3
(2.4)
A 		33.5
(-0.9)
A 		67.5
(3)
A 		31.1
(-1.1)
A 		14.6
(-3)
A 		53
avr 58.3
(2.4) 		53.1
(1.5) 		42.2
(-0.5) 		61.4
(3) 		39.5
(-1) 		28.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 18.2
(3)
M 		7.9
(-2.7)
A 		7.4
(-3)
A 		17.8
(2.8)
P 		11
B 15.2
(3)
A 		9.7
(-2.2)
A 		9.8
(-2.1)
M 		8.9
(-3)
A 		6
C 13.6
(3)
A 		11.9
(1.5)
P 		11.8
(1.4)
A 		7
(-3)
A 		7
avr 15.7
(3) 		9.8
(-2.9) 		9.7
(-3) 		11.2
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.7
(0.7)
M 		18.1
(3)
P 		12.7
(-0.7)
P 		15.4
(1.1)
P 		9.4
(-3)
A 		10.4
(-2.3)
A 		9
B 16.1
(0.1)
M 		15.3
(-0.2)
A 		8.5
(-3)
A 		14.8
(-0.4)
A 		23
(3)
A 		10.6
(-2.1)
A 		15
C 18.1
(2.6)
A 		19
(3)
A 		8.5
(-1.5)
A 		13.6
(0.7)
A 		10.1
(-0.8)
A 		4.9
(-3)
A 		14
avr 16.3
(2.2) 		17.5
(3) 		9.9
(-2.1) 		14.6
(1) 		14.2
(0.8) 		8.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5501
Sequence Type Exemplar sequence
Representative Public ID F40H7.1 NCBI
Target Description F40H7.1 /REP_DB=WormBase Gene ID /WP=CE10198 /TR=O17097 /GB=AAF39801.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40H7.1 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3707604:3709215:1 gene:F40H7.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031708 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3707602-3708655(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40H7.1
Sequence
Target Sequence 
>C. ELEGANS:184180_AT
ttgcagcatcaatcggtgtcttggtaaatttgttcatgttttatcacttcatatcacttg
aaaaaactgtgttttacattctatgctcgtcgaaatccatctcaaatactttggttttac
ttatctattttggttttgttggtcccactaatgctttttacaaagcaatgggttctgaca
tgttgagtggttatctgtatcaggccatggggtttgggctctatttgcaaggtcccacaa
ctcagctaatgataaccattaaccgattccttgtggtatggtgctccccggtcaatactc
caaggtacagtacccggattactgtagccgcaatgacaatctcatgggtttttcacaaca
tttgccggcacccattcgcttttgcccatgtgccttacccgaaatataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAGCATCAATCGGTGTCTTGGT 591 703 77 Antisense
TTGTTGGTCCCACTAATGCTTTTTA 251 705 212 Antisense
GGGTTCTGACATGTTGAGTGGTTAT 692 495 246 Antisense
GAGTGGTTATCTGTATCAGGCCATG 516 401 261 Antisense
ATCAGGCCATGGGGTTTGGGCTCTA 331 27 275 Antisense
GGGCTCTATTTGCAAGGTCCCACAA 495 491 292 Antisense
AGGTCCCACAACTCAGCTAATGATA 578 57 306 Antisense
CCCCGGTCAATACTCCAAGGTACAG 434 199 362 Antisense
GACAATCTCATGGGTTTTTCACAAC 30 365 411 Antisense
GGGTTTTTCACAACATTTGCCGGCA 672 489 422 Antisense
CCATGTGCCTTACCCGAAATATAAA 581 269 462 Antisense
Sequence Source Affymetrix Proprietary Database