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[184179_at]

Description T14B4.9 /REP_DB=WormBase Gene ID /WP=CE04955 /TR=Q22481 /GB=AAK31555.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 39.3
(0.1)
A 		62
(3)
A 		14.6
(-3)
A 		58.4
(2.5)
A 		47
B 29.3
(3)
A 		5.2
(-3)
A 		8
(-2.3)
A 		12.6
(-1.2)
A 		24
C 33.7
(-1.8)
A 		58
(3)
A 		27.7
(-3)
A 		42.2
(-0.1)
A 		30
avr 34.1
(1.2) 		41.7
(3) 		16.8
(-3) 		37.7
(2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 28.2
(-0.7)
A 		42
(0.9)
A 		60
(3)
P 		31
(-0.4)
P 		42
(0.9)
A 		8.8
(-3)
A 		51
B 34.2
(-1.2)
A 		32.6
(-1.4)
A 		61.3
(3)
P 		39.1
(-0.4)
A 		30.7
(-1.7)
A 		22.3
(-3)
A 		39
C 31
(-0.8)
A 		9.3
(-3)
A 		46.9
(0.9)
A 		67.6
(3)
A 		40.8
(0.2)
A 		33.5
(-0.5)
A 		58
avr 31.1
(-1.3) 		28
(-1.9) 		56.1
(3) 		45.9
(1.2) 		37.8
(-0.2) 		21.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.3
(3)
A 		13.5
(2.5)
A 		3.8
(-3)
A 		8.5
(-0.3)
A 		11
B 9.3
(3)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		2.7
(-2)
A 		8
C 11.2
(-0.4)
A 		16.7
(3)
A 		9.6
(-1.4)
A 		7.1
(-3)
A 		10
avr 11.6
(3) 		10.5
(2) 		5.1
(-3) 		6.1
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.2
(-1.5)
A 		14.9
(3)
A 		13.1
(2.2)
P 		7.9
(-0.3)
P 		12.7
(2)
A 		2.1
(-3)
A 		13
B 11.9
(0.3)
A 		10.9
(-0.6)
A 		14.9
(3)
P 		10.3
(-1.2)
A 		12.5
(0.8)
A 		8.3
(-3)
A 		7
C 11.5
(1.8)
A 		2.8
(-3)
A 		11.9
(2.1)
A 		13.6
(3)
A 		13.2
(2.8)
A 		11.2
(1.7)
A 		11
avr 9.5
(-0.7) 		9.5
(-0.7) 		13.3
(3) 		10.6
(0.3) 		12.8
(2.5) 		7.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4466
Sequence Type Exemplar sequence
Representative Public ID T14B4.9 NCBI
Target Description T14B4.9 /REP_DB=WormBase Gene ID /WP=CE04955 /TR=Q22481 /GB=AAK31555.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062970 NCBI Caenorhabditis elegans T14B4.9 (T14B4.9) mRNA, complete cds. 11/11 None
SNAP00000000079 ENSEMBL cdna:SNAP chromosome:CEL140:II:6729596:6733674:-1 9/11 None
GENEFINDER00000000085 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6730142:6733719:-1 9/11 None
T14B4.9 ENSEMBL cdna:known chromosome:CEL140:II:6732335:6733719:-1 gene:T14B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6732331-6733716(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B4.9
Entrez Gene 188494 Entrez gene
WormBase CE38979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495371 T14B4.9 [Caenorhabditis elegans] 0.0
blast AAK31555 Hypothetical protein T14B4.9 [Caenorhabditis elegans] 0.0
blast CAE66027 Hypothetical protein CBG11221 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.5E-112
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.5E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495371.1 1 9-28
T14B4.9 1 9-28
GENEFINDER00000000085 1 9-28
Sequence
Target Sequence 
>C. ELEGANS:184179_AT
gatgcaaaatcatgacgtcgttggaaaatcagtttatgaaatatctagaatatttgagat
tcttgatggtgccaacgatattgatattgacaaggaattcgggagaatagatgaaagttt
gaagtgggatttgaaaacgttgagattatttcgagatgagtctgctctcaactctacgta
cttgaacagtacgttacgagtttccaaaggatcagtgcaaggatcattgtcgagagcagc
agtagaatggatggtgaagacagtaaatccaagagtgtatctagatcaatggaatgaagg
ggcgtacggagttgatgaacaatggatatcaacatttcaagccaatgatttccttggtat
gcccggacatttttctgatatatgcttgaatgaaacaggaaacaagacagattttatcac
aaggtttgagctgttctcattcactctaaaactagtttcaactgctttttcattacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAAAATCATGACGTCGTTGGA 622 411 609 Antisense
TTGAGATTCTTGATGGTGCCAACGA 262 703 662 Antisense
GAGATGAGTCTGCTCTCAACTCTAC 471 395 761 Antisense
TGCTCTCAACTCTACGTACTTGAAC 189 581 771 Antisense
TGAACAGTACGTTACGAGTTTCCAA 108 573 791 Antisense
GGATCATTGTCGAGAGCAGCAGTAG 72 513 829 Antisense
GAAGGGGCGTACGGAGTTGATGAAC 543 333 904 Antisense
AATGATTTCCTTGGTATGCCCGGAC 628 161 952 Antisense
ATGCCCGGACATTTTTCTGATATAT 427 41 967 Antisense
GAGCTGTTCTCATTCACTCTAAAAC 481 387 1036 Antisense
AGTTTCAACTGCTTTTTCATTACCT 623 61 1062 Antisense
Sequence Source Affymetrix Proprietary Database