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[184178_at]

Description F31B12.3 /REP_DB=WormBase Gene ID /WP=CE03283 /TR=Q19928 /GB=CAA90608.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 31      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 48
(3)
P 		4.2
(-3)
A 		39.2
(1.8)
A 		13.9
(-1.7)
A 		44
B 46.9
(3)
A 		15.9
(-2.6)
A 		13.9
(-3)
A 		43.7
(2.4)
P 		33
C 48.2
(3)
A 		8.3
(-2.3)
A 		2.6
(-3)
A 		39.7
(1.9)
A 		46
avr 47.7
(3) 		9.5
(-3) 		18.6
(-1.6) 		32.4
(0.6) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.6
(-2.7)
A 		34
(1.3)
A 		4.6
(-3)
A 		8.1
(-2.5)
A 		7.6
(-2.6)
A 		46.1
(3)
A 		42
B 16.3
(1.1)
A 		10
(-0.9)
A 		3.1
(-3)
A 		9.2
(-1.1)
A 		22.6
(3)
A 		14.9
(0.6)
A 		20
C 29.1
(3)
A 		23.5
(1.8)
A 		25.2
(2.1)
A 		5.2
(-2.2)
A 		7.7
(-1.7)
A 		1.6
(-3)
A 		28
avr 17.3
(0.9) 		22.5
(3) 		11
(-1.6) 		7.5
(-3) 		12.6
(-1) 		20.9
(2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.5
(3)
P 		0.9
(-3)
A 		10.2
(0.4)
A 		2
(-2.6)
A 		17
B 14.9
(3)
A 		3.9
(-2.6)
A 		3.2
(-3)
A 		9.3
(0.1)
P 		12
C 16
(3)
A 		2.4
(-2.4)
A 		0.9
(-3)
A 		6.7
(-0.7)
A 		15
avr 16.1
(3) 		2.4
(-3) 		4.8
(-1.9) 		6
(-1.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		12.1
(3)
A 		1
(-3)
A 		2
(-2.5)
A 		2.3
(-2.3)
A 		11.2
(2.5)
A 		11
B 5.7
(0.5)
A 		3.3
(-1.2)
A 		0.8
(-3)
A 		2.4
(-1.9)
A 		9.2
(3)
A 		5.6
(0.4)
A 		8
C 10.8
(3)
A 		7.2
(0.9)
A 		6.4
(0.4)
A 		1
(-2.7)
A 		2.5
(-1.8)
A 		0.5
(-3)
A 		10
avr 5.9
(1.3) 		7.5
(3) 		2.7
(-2.1) 		1.8
(-3) 		4.7
(0.1) 		5.8
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17136
Sequence Type Exemplar sequence
Representative Public ID F31B12.3 NCBI
Target Description F31B12.3 /REP_DB=WormBase Gene ID /WP=CE03283 /TR=Q19928 /GB=CAA90608.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077405 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-9) (frm-9) mRNA, complete cds. 11/11 None
GENEFINDER00000024692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10816891:10825466:-1 10/11 None
F31B12.3 ENSEMBL cdna:known chromosome:CEL140:X:10816678:10818640:-1 gene:F31B12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024689 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10816677-10818640(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol frm-9
Ensembl F31B12.3
Entrez Gene 266949 Entrez gene
SwissProt Q19928 EMBL-EBI
WormBase CE03283 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90608 Hypothetical protein F31B12.3 [Caenorhabditis elegans] ref|NP_509806.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-9) [Caenorhabditis elegans] 0.0
blast CAA90607 Hypothetical protein F31B12.2 [Caenorhabditis elegans] ref|NP_509807.1| F31B12.2 [Caenorhabditis elegans] 0.0
blast CAE70815 Hypothetical protein CBG17584 [Caenorhabditis briggsae] 0.0
blast CAE70816 Hypothetical protein CBG17586 [Caenorhabditis briggsae] 1.0E-148
blast CAA90608 Hypothetical protein F31B12.3 [Caenorhabditis elegans] ref|NP_509806.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-9) [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:184178_AT
gaggctgcataccttgcaagtattcagttatcagttgaagagcagtggccgagtaataaa
aggacccagacaattagaagacatttattgaaaggacagtttggtcgaatccgggatctc
gcccaaaagatcatggtgactccatgggaagttgatcaaaacttgtactgcacaccaccc
agatttcccaatgaatcggcaaatgctagtagagcacaatcagtggttgaggaaattcag
cacagatcaagaactccaactcttctgcgatgtatcacaaacacagacggcttaatgtca
gaagagatgcaagctcagtgccttcccgtcgatctacgtggtgatcgtagaactatcaag
ctggtcaaggagaggaagcgaaaattgttccatagtcaagtctatgaaagtgaaattggc
atgaagaaattgtacattcagaccgccaaaaaactagccgcatttggttgtaaggttttt
caagttaaagagttgcttcacggacgaacactcagaaaaaaaaatccgactgaaaagtgc
agtattagaaaaagttgttgttcaatgttccatgacctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTGCATACCTTGCAAGTATTC 230 405 538 Antisense
GTTTGGTCGAATCCGGGATCTCGCC 645 451 636 Antisense
ATCAAAACTTGTACTGCACACCACC 251 27 692 Antisense
ACCACCCAGATTTCCCAATGAATCG 326 85 711 Antisense
TCCAACTCTTCTGCGATGTATCACA 20 589 792 Antisense
CTTCCCGTCGATCTACGTGGTGATC 102 215 859 Antisense
GAAATTGTACATTCAGACCGCCAAA 327 363 963 Antisense
AGACCGCCAAAAAACTAGCCGCATT 672 69 977 Antisense
CTAGCCGCATTTGGTTGTAAGGTTT 52 225 991 Antisense
AAGAGTTGCTTCACGGACGAACACT 260 153 1025 Antisense
GTTGTTCAATGTTCCATGACCTCAC 643 437 1094 Antisense
Sequence Source Affymetrix Proprietary Database