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[184177_at]

Description F38B6.3 /REP_DB=WormBase Gene ID /WP=CE04516 /TR=Q20145 /GB=AAA81144.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 55      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 148
(3)
P 		31
(-3)
A 		82.3
(-0.4)
A 		39.3
(-2.6)
A 		117
B 202
(3)
P 		123.9
(0)
A 		57.9
(-2.5)
A 		44
(-3)
A 		158
C 162.8
(3)
P 		52.3
(-2.3)
A 		70.9
(-1.4)
A 		38.5
(-3)
A 		124
avr 170.9
(3) 		69.1
(-1.7) 		70.4
(-1.6) 		40.6
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 28.8
(-3)
A 		72.2
(1.2)
A 		81.1
(2.1)
A 		90.1
(3)
P 		78.3
(1.8)
A 		65
(0.5)
A 		61
B 74.2
(1.6)
A 		40.7
(-2.4)
A 		74
(1.6)
A 		38.2
(-2.7)
A 		85.6
(3)
A 		35.3
(-3)
A 		50
C 97.8
(3)
P 		50.7
(-3)
P 		92.2
(2.3)
A 		61.9
(-1.6)
A 		82
(1)
P 		73.4
(-0.1)
A 		47
avr 66.9
(-0.3) 		54.5
(-3) 		82.4
(3) 		63.4
(-1.1) 		82
(2.9) 		57.9
(-2.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 53.9
(3)
P 		6.7
(-2.9)
A 		21.5
(-1)
A 		5.8
(-3)
A 		48
B 64.4
(3)
P 		30.6
(-0.7)
A 		13.4
(-2.6)
A 		9.4
(-3)
A 		55
C 53.9
(3)
P 		15
(-1.9)
A 		24.7
(-0.7)
A 		6.5
(-3)
A 		47
avr 57.4
(3) 		17.4
(-1.8) 		19.9
(-1.5) 		7.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5.3
(-3)
A 		25.7
(3)
A 		17.7
(0.6)
A 		22.8
(2.1)
P 		23.6
(2.4)
A 		15.8
(0.1)
A 		20
B 25.8
(0.8)
A 		13.6
(-2.1)
A 		18
(-1.1)
A 		10.1
(-3)
A 		34.8
(3)
A 		13.2
(-2.2)
A 		25
C 36.2
(3)
P 		15.5
(-2.2)
P 		23.5
(-0.2)
A 		12.5
(-3)
A 		26.5
(0.5)
P 		24.6
(0.1)
A 		24
avr 22.4
(0.3) 		18.3
(-1.5) 		19.7
(-0.9) 		15.1
(-3) 		28.3
(3) 		17.9
(-1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17148
Sequence Type Exemplar sequence
Representative Public ID F38B6.3 NCBI
Target Description F38B6.3 /REP_DB=WormBase Gene ID /WP=CE04516 /TR=Q20145 /GB=AAA81144.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076723 NCBI Caenorhabditis elegans F38B6.3 (F38B6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000034015 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6693688:6695603:1 11/11 None
F38B6.3 ENSEMBL cdna:known chromosome:CEL140:X:6692213:6695603:1 gene:F38B6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034005 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6692212-6695603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B6.3
Entrez Gene 185453 Entrez gene
SwissProt Q20145 EMBL-EBI
WormBase CE04516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81144 Hypothetical protein F38B6.3 [Caenorhabditis elegans] ref|NP_509124.1| F38B6.3 [Caenorhabditis elegans] 1.0E-114
blast AAA81144 Hypothetical protein F38B6.3 [Caenorhabditis elegans] ref|NP_509124.1| F38B6.3 [Caenorhabditis elegans] 1.0E-103
blast CAE65773 Hypothetical protein CBG10868 [Caenorhabditis briggsae] 2.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509124.1 1 89-111
F38B6.3 1 89-111
GENEFINDER00000034015 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:184177_AT
ttatggttgttcttcttcttattgctgcgatcgttatcataattctttttgcgacaggag
tattttctagcaccgatccactgcaaaatccaacgagttctccgattttcaatcctactc
ttcgaccaccgataaataacataccaacattgggacctcctatattttcacagaaccaat
cttactctggagccttcaccattttataccaagcaagtaacgattttgatacaaagaata
caaataattacaacagggtgttcaacttaatacaaaatgcacttgacaatgtttttgtga
cttccactcttcgtccatacgctgcaaaggcaaccctcacagacttgcagaacagtggga
acgacttacaagtgctgttcagggttaatatgttgggtggcggaaatgtcgaccaattta
cagtggctgatgttatcagaaataatctcaatcaactacggactctgctcaacggaaacg
ctccaatcgatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGTTGTTCTTCTTCTTATTGC 659 679 293 Antisense
TTTTCTAGCACCGATCCACTGCAAA 154 675 355 Antisense
AGTTCTCCGATTTTCAATCCTACTC 13 65 388 Antisense
TTGGGACCTCCTATATTTTCACAGA 497 707 442 Antisense
GAACCAATCTTACTCTGGAGCCTTC 219 343 465 Antisense
GAGCCTTCACCATTTTATACCAAGC 35 385 482 Antisense
AATGTTTTTGTGACTTCCACTCTTC 34 165 580 Antisense
TTCGTCCATACGCTGCAAAGGCAAC 330 615 602 Antisense
CAACCCTCACAGACTTGCAGAACAG 530 187 623 Antisense
TCAATCAACTACGGACTCTGCTCAA 373 633 740 Antisense
AACGGAAACGCTCCAATCGATCCAA 379 119 763 Antisense
Sequence Source Affymetrix Proprietary Database