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[184176_at]

Description T08B1.2 /REP_DB=WormBase Gene ID /WP=CE13413 /TR=O44556 /GB=AAB94176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 02      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2827
1 2 3 4 range
A 4000.6
(3)
P 		2839.7
(-0.5)
P 		2014.1
(-3)
P 		2154.6
(-2.6)
P 		1987
B 4462.4
(3)
P 		2597.8
(-1.6)
P 		2276
(-2.4)
P 		2033.8
(-3)
P 		2429
C 4226.3
(3)
P 		2938.9
(0)
P 		2252.6
(-1.6)
P 		1635
(-3)
P 		2591
avr 4229.8
(3) 		2792.1
(-0.8) 		2180.9
(-2.4) 		1941.1
(-3) 		2289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2792
1 2 3 4 5 6 range
A 3493.9
(2.9)
P 		3545.2
(3)
P 		1786.8
(-1.1)
P 		1586.5
(-1.6)
P 		1116.2
(-2.7)
P 		991.1
(-3)
P 		2554
B 3248.6
(3)
P 		2882.1
(2)
P 		1883.9
(-0.6)
P 		1398.8
(-1.9)
P 		1080.9
(-2.7)
P 		986.5
(-3)
P 		2262
C 3652
(3)
P 		2889.6
(1.4)
P 		2298.4
(0.1)
P 		1310.1
(-2)
P 		1199.5
(-2.3)
P 		860.4
(-3)
P 		2792
avr 3464.8
(3) 		3105.6
(2.1) 		1989.7
(-0.5) 		1431.8
(-1.8) 		1132.2
(-2.6) 		946
(-3) 		2519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1181
1 2 3 4 range
A 1456.6
(3)
P 		616.4
(-1.4)
P 		526.5
(-1.9)
P 		315.4
(-3)
P 		1141
B 1423
(3)
P 		641.6
(-1.7)
P 		527.4
(-2.4)
P 		433.4
(-3)
P 		990
C 1399
(3)
P 		844.9
(0)
P 		785.1
(-0.3)
P 		275.7
(-3)
P 		1123
avr 1426.2
(3) 		701
(-1) 		613
(-1.5) 		341.5
(-3) 		1085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1112
1 2 3 4 5 6 range
A 644.1
(-0.6)
P 		1260.8
(3)
P 		389.1
(-2.1)
P 		402.4
(-2.1)
P 		336.8
(-2.4)
P 		241.3
(-3)
P 		1020
B 1130.4
(3)
P 		959.3
(1.7)
P 		457.5
(-2.3)
P 		370.5
(-3)
P 		439.2
(-2.4)
P 		367.9
(-3)
P 		763
C 1353.7
(3)
P 		881.7
(0.4)
P 		585
(-1.2)
P 		263.5
(-3)
P 		388.1
(-2.3)
P 		288
(-2.9)
P 		1090
avr 1042.7
(3) 		1033.9
(2.9) 		477.2
(-1.6) 		345.5
(-2.6) 		388
(-2.3) 		299.1
(-3) 		744
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15739
Sequence Type Exemplar sequence
Representative Public ID T08B1.2 NCBI
Target Description T08B1.2 /REP_DB=WormBase Gene ID /WP=CE13413 /TR=O44556 /GB=AAB94176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071143(11), NM_182357(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071143 NCBI Caenorhabditis elegans TropoNin T family member (tnt-4) (tnt-4) mRNA, complete cds. 11/11 None
NM_182357 NCBI Caenorhabditis elegans TropoNin T family member (tnt-4) (tnt-4) mRNA, complete cds. 10/11 None
SNAP00000025792 ENSEMBL cdna:SNAP chromosome:CEL140:V:1989505:1992714:-1 11/11 None
GENEFINDER00000025795 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1989505:1994274:-1 11/11 None
T08B1.2a ENSEMBL cdna:known chromosome:CEL140:V:1989501:1992714:-1 gene:T08B1.2 11/11 None
T08B1.2b ENSEMBL cdna:known chromosome:CEL140:V:1989831:1992717:-1 gene:T08B1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1989504-1993037(-) 91.21 100.0
Public Domain and Genome References
Ensembl T08B1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94176 Troponin t protein 4, isoform a [Caenorhabditis elegans] ref|NP_503544.2| TropoNin T family member (tnt-4) [Caenorhabditis elegans] 6.0E-97
blast AAB94176 Troponin t protein 4, isoform a [Caenorhabditis elegans] ref|NP_503544.2| TropoNin T family member (tnt-4) [Caenorhabditis elegans] 9.0E-97
blast CAE66782 Hypothetical protein CBG12139 [Caenorhabditis briggsae] 1.0E-92
blast CAE66782 Hypothetical protein CBG12139 [Caenorhabditis briggsae] 2.0E-92
blast AAO25996 Troponin t protein 4, isoform b [Caenorhabditis elegans] ref|NP_872157.1| TropoNin T family member (tnt-4) [Caenorhabditis elegans] 5.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 8.0E-11
Pfam IPR001978 EMBL-EBI Troponin 8.0E-11
Pfam IPR001978 EMBL-EBI Troponin 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184176_AT
gagtccgccggagttggagatcgtttcggaaacatcgtgcaggccaaacaagagatggga
atgaccaaagaacaacaggaagaggctaagtcggtcgccatggccggtattcgtaagtcg
atcgccgaggcttccaccattcttccaaatgatatgaaggccaagatcaaggagcttcat
caaagaatctgcaagttggaggctcagaagtacgatttggagaagagacacgagagacag
gagtacgatctgaaagaattgaatgagcgttcccgtcaagtggcccgtgccaacaacgcc
aagaacggacaagtcagcggagacgacaccggaggaagacatccaccaaaggtccaaatc
tcttccaaatacgacagacaaatcgacagaagaaacttcaaggagcgccgtcaggtttat
gagaacaaaatcgcattcccatgcttcccaggagttgccccaccaccggcattgtacgag
aagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCCGCCGGAGTTGGAGATCGTT 618 399 1009 Antisense
GTTTCGGAAACATCGTGCAGGCCAA 395 449 1031 Antisense
AAGAGGCTAAGTCGGTCGCCATGGC 497 151 1088 Antisense
TCGCCATGGCCGGTATTCGTAAGTC 441 595 1103 Antisense
TTCGTAAGTCGATCGCCGAGGCTTC 521 651 1118 Antisense
GCTTCCACCATTCTTCCAAATGATA 475 305 1138 Antisense
TTGAATGAGCGTTCCCGTCAAGTGG 111 703 1267 Antisense
GACACCGGAGGAAGACATCCACCAA 542 365 1333 Antisense
AGGTCCAAATCTCTTCCAAATACGA 235 57 1358 Antisense
ACTTCAAGGAGCGCCGTCAGGTTTA 479 95 1403 Antisense
CCACCACCGGCATTGTACGAGAAGG 293 273 1468 Antisense
Sequence Source Affymetrix Proprietary Database