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[184175_at]

Description F58E10.7 /REP_DB=WormBase Gene ID /WP=CE18789 /TR=Q9XUW9 /GB=CAB04514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 48      6grp_total > 68      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17207
1 2 3 4 range
A 4022.3
(-2.1)
P 		2123.6
(-2.8)
P 		1607.6
(-3)
P 		18437
(3)
P 		16829
B 4164.2
(-2)
P 		1994.2
(-2.7)
P 		1230.4
(-3)
P 		18374
(3)
P 		17144
C 4531.1
(-1.8)
P 		2191.1
(-2.7)
P 		1513.2
(-3)
P 		17162.5
(3)
P 		15649
avr 4239.2
(-2) 		2103
(-2.8) 		1450.4
(-3) 		17991.2
(3) 		16541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3853
1 2 3 4 5 6 range
A 4199
(-1.3)
P 		3816.5
(-2)
P 		3214.7
(-3)
P 		3306.7
(-2.8)
P 		3571.4
(-2.4)
P 		6783.9
(3)
P 		3569
B 3549.2
(-1.3)
P 		3221.7
(-2.2)
P 		3304.3
(-2)
P 		2930.6
(-3)
P 		3150.4
(-2.4)
P 		5156.2
(3)
P 		2226
C 4047.3
(-0.7)
P 		3063
(-3)
P 		3333.3
(-2.4)
P 		3695.1
(-1.6)
P 		3721.1
(-1.5)
P 		5681.8
(3)
P 		2619
avr 3931.8
(-1.5) 		3367.1
(-2.8) 		3284.1
(-3) 		3310.8
(-2.9) 		3481
(-2.5) 		5874
(3) 		2590
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3630
1 2 3 4 range
A 1464.5
(-0.3)
P 		461
(-2.9)
P 		420.3
(-3)
P 		2698.8
(3)
P 		2279
B 1327.9
(-1.3)
P 		492.5
(-2.7)
P 		285.1
(-3)
P 		3915.5
(3)
P 		3630
C 1499.9
(-0.5)
P 		629.9
(-2.7)
P 		527.4
(-3)
P 		2893.9
(3)
P 		2367
avr 1430.8
(-0.8) 		527.8
(-2.7) 		410.9
(-3) 		3169.4
(3) 		2759

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1223
1 2 3 4 5 6 range
A 774.1
(-2.5)
P 		1357.3
(1.1)
P 		700.1
(-3)
P 		838.7
(-2.1)
P 		1077.7
(-0.6)
P 		1651.7
(3)
P 		952
B 1235
(-0.6)
P 		1072.4
(-1.4)
P 		802.4
(-2.9)
P 		776.2
(-3)
P 		1280
(-0.4)
P 		1922.7
(3)
P 		1147
C 1500.1
(0.9)
P 		934.6
(-2)
P 		848.4
(-2.5)
P 		743.1
(-3)
P 		1204.1
(-0.6)
P 		1902
(3)
P 		1159
avr 1169.7
(-0.8) 		1121.4
(-1.1) 		783.6
(-3) 		786
(-3) 		1187.3
(-0.7) 		1825.5
(3) 		1042
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14691
Sequence Type Exemplar sequence
Representative Public ID F58E10.7 NCBI
Target Description F58E10.7 /REP_DB=WormBase Gene ID /WP=CE18789 /TR=Q9XUW9 /GB=CAB04514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074076 NCBI Caenorhabditis elegans F58E10.7 (F58E10.7) mRNA, complete cds. 11/11 None
SNAP00000001486 ENSEMBL cdna:SNAP chromosome:CEL140:V:13995350:13995892:1 11/11 None
GENEFINDER00000001496 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13995350:13995892:1 11/11 None
F58E10.7 ENSEMBL cdna:known chromosome:CEL140:V:13995287:13996063:1 gene:F58E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13995349-13995892(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E10.7
Entrez Gene 179895 Entrez gene
SwissProt Q9XUW9 EMBL-EBI
WormBase CE18789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04514 Hypothetical protein F58E10.7 [Caenorhabditis elegans] ref|NP_506477.1| F58E10.7 [Caenorhabditis elegans] 3.0E-91
blast CAA94915 Hypothetical protein F23D12.3 [Caenorhabditis elegans] ref|NP_510403.1| F23D12.3 [Caenorhabditis elegans] 2.0E-67
blast CAE66172 Hypothetical protein CBG11410 [Caenorhabditis briggsae] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:184175_AT
acactccaactgttattctcatctcttcactcgtcctggcctcgggttacagtgttcgtt
caactgctaagaacaccgttcaagatgctcacgatcaactcacaaagagcattcggtgct
gggagccgattgatgtcaacaatccatcaaaaggatacacgatgagcgagccgatctacg
agttgtgtagctacatgccagacccaaaggactacaacaagtactacgtcaatggagttc
aaatggattccgatgattacaccaacatcttggccatgtacggaaatccaatcccaggac
acgctgtgatcaacgtttgtctacaagaggcattccaattccacgctgcaaaccatccat
ctcaggtcagcctacgttgtttgtgcaaaagagacggttgcaatctaccaaaaggattta
caaccttcctcgatttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTCCAACTGTTATTCTCATCTC 697 109 20 Antisense
CTCGGGTTACAGTGTTCGTTCAACT 87 1 60 Antisense
AAGATGCTCACGATCAACTCACAAA 479 155 101 Antisense
GTGCTGGGAGCCGATTGATGTCAAC 18 479 135 Antisense
ACACGATGAGCGAGCCGATCTACGA 331 109 176 Antisense
TTGTGTAGCTACATGCCAGACCCAA 493 705 202 Antisense
CAATCCCAGGACACGCTGTGATCAA 55 171 308 Antisense
TACAAGAGGCATTCCAATTCCACGC 229 641 341 Antisense
CTGCAAACCATCCATCTCAGGTCAG 42 239 365 Antisense
AGGTCAGCCTACGTTGTTTGTGCAA 342 55 383 Antisense
ATTTACAACCTTCCTCGATTTCAAT 704 13 435 Antisense
Sequence Source Affymetrix Proprietary Database