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[184174_at]

Description ZC204.12 /REP_DB=WormBase Gene ID /WP=CE15106 /TR=P91544 /GB=AAB37918.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 46      6grp_total > 83      4grp_total > 04      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6269
1 2 3 4 range
A 2444.9
(-0.8)
P 		1369.2
(-2.5)
P 		1056.5
(-3)
P 		4929
(3)
P 		3873
B 2655.5
(-1.5)
P 		1188
(-2.9)
P 		1120.8
(-3)
P 		7325.4
(3)
P 		6205
C 2191.7
(-1.9)
P 		1080.6
(-3)
P 		1187.4
(-2.9)
P 		7068.9
(3)
P 		5988
avr 2430.7
(-1.5) 		1212.6
(-2.9) 		1121.6
(-3) 		6441.1
(3) 		5320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3003
1 2 3 4 5 6 range
A 1902.3
(-3)
P 		2096.9
(-2.6)
P 		2969.7
(-0.6)
P 		4549.7
(3)
P 		4184.4
(2.2)
P 		2661
(-1.3)
P 		2647
B 2003.2
(-3)
P 		2694.6
(-1.6)
P 		2929.8
(-1.1)
P 		3680
(0.5)
P 		4904.8
(3)
P 		3504.9
(0.1)
P 		2902
C 2076.1
(-3)
P 		2519.3
(-1.6)
P 		2395.2
(-2)
P 		3736.2
(2.2)
P 		4000
(3)
P 		2909.9
(-0.4)
P 		1924
avr 1993.9
(-3) 		2436.9
(-1.9) 		2764.9
(-1) 		3988.6
(2.1) 		4363.1
(3) 		3025.3
(-0.4) 		2369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1301
1 2 3 4 range
A 890.2
(3)
P 		297.2
(-2.8)
P 		276.2
(-3)
P 		721.5
(1.4)
P 		614
B 846.8
(-0.3)
P 		293.4
(-2.8)
P 		259.7
(-3)
P 		1561
(3)
P 		1301
C 725.5
(-0.2)
P 		310.7
(-3)
P 		413.8
(-2.3)
P 		1191.9
(3)
P 		881
avr 820.8
(0.6) 		300.4
(-3) 		316.6
(-2.9) 		1158.1
(3) 		858

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1642
1 2 3 4 5 6 range
A 350.7
(-3)
P 		745.8
(-0.4)
P 		646.7
(-1.1)
P 		1153.9
(2.3)
P 		1262.7
(3)
P 		647.9
(-1)
P 		912
B 697
(-3)
P 		896.9
(-2.1)
P 		711.4
(-2.9)
P 		974.7
(-1.7)
P 		1992.7
(3)
P 		1307
(-0.2)
P 		1296
C 769.5
(-1.6)
P 		768.7
(-1.6)
P 		609.6
(-3)
P 		751.4
(-1.8)
P 		1294.4
(3)
P 		974.1
(0.2)
P 		685
avr 605.7
(-3) 		803.8
(-1.7) 		655.9
(-2.7) 		960
(-0.7) 		1516.6
(3) 		976.3
(-0.6) 		911
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4924
Sequence Type Exemplar sequence
Representative Public ID ZC204.12 NCBI
Target Description ZC204.12 /REP_DB=WormBase Gene ID /WP=CE15106 /TR=P91544 /GB=AAB37918.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061628 NCBI Caenorhabditis elegans ZC204.12 (ZC204.12) mRNA, complete cds. 11/11 None
SNAP00000031415 ENSEMBL cdna:SNAP chromosome:CEL140:II:1656381:1657280:-1 11/11 None
GENEFINDER00000031427 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1656381:1657280:-1 11/11 None
ZC204.12 ENSEMBL cdna:known chromosome:CEL140:II:1656266:1657305:-1 gene:ZC204.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1656379-1657279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.12
Entrez Gene 173536 Entrez gene
SwissProt P91544 EMBL-EBI
WormBase CE15106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37918 Hypothetical protein ZC204.12 [Caenorhabditis elegans] ref|NP_494029.1| ZC204.12 [Caenorhabditis elegans] 1.0E-110
blast AAB37919 Hypothetical protein ZC204.13 [Caenorhabditis elegans] ref|NP_494030.1| ZC204.13 [Caenorhabditis elegans] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:184174_AT
gaccaatgatggtttctggatttctgcattctttaaaggagcttctaaaaagaaaattag
tatcaaggctgaattcacacttttatgtgcaggtcaagaaccactcaacaaaacggaaaa
aaaagattcagattgtacaaaaaagtctacagaatacgaagtttgcgccatgtttactga
atgtgaaactgaaaatcactttgaaaaaggttccgacttgcgatttgaagttgaattaac
aatagtcatggaaaacagttctaaaaagtcaagtgttaaaccaaaacctgaagccaaaca
agaacccaccaaagagaatgataaaattgtgggcagtgaatcgatgatgttagaccaact
cacgtccaaacttttcttgaaggcttcggaaggagctcggatcattagcaatgaaattat
caatgatcttctcgatattgcaaacaggtttgatgtacccgaggtgaagacaaagtgtga
gcagtttcttctagaagatttgaaaaaggcgctaaaagaaaaaatggaaaccgcagaaaa
gtacgagctcgactgtttgcaggcagttaaatcggcagatgatgctctggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAATGATGGTTTCTGGATTTCT 158 385 150 Antisense
GTATCAAGGCTGAATTCACACTTTT 62 455 209 Antisense
GTGCAGGTCAAGAACCACTCAACAA 28 481 236 Antisense
AATACGAAGTTTGCGCCATGTTTAC 279 171 302 Antisense
GATGATGTTAGACCAACTCACGTCC 175 411 492 Antisense
ACTCACGTCCAAACTTTTCTTGAAG 536 99 507 Antisense
GAAGGAGCTCGGATCATTAGCAATG 104 335 538 Antisense
GATCTTCTCGATATTGCAAACAGGT 177 419 574 Antisense
AAGTGTGAGCAGTTTCTTCTAGAAG 569 159 622 Antisense
GTACGAGCTCGACTGTTTGCAGGCA 68 457 690 Antisense
TAAATCGGCAGATGATGCTCTGGCC 435 641 717 Antisense
Sequence Source Affymetrix Proprietary Database