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[184173_at]

Description C54F6.6 /REP_DB=WormBase Gene ID /WP=CE08978 /TR=O16446 /GB=AAG24007.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      6grp_total > 89      4grp_total > 10      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 23.3
(-3)
A 		36.7
(-2.7)
A 		29.6
(-2.9)
A 		297.5
(3)
P 		274
B 21
(-3)
P 		38.4
(-2.3)
A 		31.9
(-2.6)
P 		178.4
(3)
P 		157
C 19.7
(-3)
A 		33.8
(-2.7)
A 		25.8
(-2.9)
A 		336.9
(3)
P 		317
avr 21.3
(-3) 		36.3
(-2.6) 		29.1
(-2.8) 		270.9
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 49.4
(0.6)
P 		28.1
(-3)
P 		63.5
(3)
P 		37.4
(-1.4)
P 		57.9
(2.1)
P 		28.8
(-2.9)
M 		35
B 62.7
(1.1)
P 		51.9
(0.2)
P 		24.9
(-2)
A 		12.5
(-3)
A 		86.8
(3)
P 		74.9
(2)
P 		74
C 23.3
(-3)
A 		87.2
(3)
P 		28.8
(-2.5)
A 		29.3
(-2.4)
A 		52.6
(-0.2)
P 		71.5
(1.5)
P 		64
avr 45.1
(-0.2) 		55.7
(1.5) 		39.1
(-1.1) 		26.4
(-3) 		65.8
(3) 		58.4
(1.9) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 8.5
(-2.9)
A 		8
(-2.9)
A 		7.7
(-3)
A 		43.6
(3)
P 		36
B 6.7
(-3)
P 		9.5
(-2.5)
A 		7.4
(-2.9)
P 		38
(3)
P 		31
C 6.5
(-3)
A 		9.7
(-2.6)
A 		9
(-2.7)
A 		56.8
(3)
P 		50
avr 7.2
(-3) 		9.1
(-2.7) 		8
(-2.9) 		46.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 9.1
(-1.8)
P 		10
(-1.3)
P 		13.8
(0.9)
P 		9.5
(-1.6)
P 		17.5
(3)
P 		7
(-3)
M 		11
B 21.8
(0.5)
P 		17.3
(-0.4)
P 		6
(-2.5)
A 		3.3
(-3)
A 		35.3
(3)
P 		27.9
(1.6)
P 		32
C 8.7
(-2.2)
A 		26.6
(3)
P 		7.3
(-2.6)
A 		5.9
(-3)
A 		17
(0.2)
P 		24
(2.2)
P 		21
avr 13.2
(-0.5) 		18
(1.1) 		9
(-2) 		6.2
(-3) 		23.3
(3) 		19.6
(1.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11480
Sequence Type Exemplar sequence
Representative Public ID C54F6.6 NCBI
Target Description C54F6.6 /REP_DB=WormBase Gene ID /WP=CE08978 /TR=O16446 /GB=AAG24007.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072536
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072536 NCBI Caenorhabditis elegans C54F6.6 (C54F6.6) mRNA, complete cds. None
SNAP00000031622 ENSEMBL cdna:SNAP chromosome:CEL140:V:7526328:7526662:1 None
GENEFINDER00000031635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7527603:7530547:1 None
C54F6.6 ENSEMBL cdna:known chromosome:CEL140:V:7526328:7528065:1 gene:C54F6.6 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7526328-7528935(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54F6.6
Entrez Gene 183805 Entrez gene
SwissProt O16446 EMBL-EBI
WormBase CE30739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504937 C54F6.6 [Caenorhabditis elegans] gb|AAG24007.2| Hypothetical protein C54F6.6 [Caenorhabditis elegans] 9.0E-71
blast T31863 hypothetical protein C54F6.6 - Caenorhabditis elegans 4.0E-62
blast T31863 hypothetical protein C54F6.6 - Caenorhabditis elegans 3.0E-58
blast NP_001023737 C54F6.15 [Caenorhabditis elegans] gb|AAX22291.1| Hypothetical protein C54F6.15 [Caenorhabditis elegans] 2.0E-45
blast NP_504937 C54F6.6 [Caenorhabditis elegans] gb|AAG24007.2| Hypothetical protein C54F6.6 [Caenorhabditis elegans] 3.0E-44
blast T31863 hypothetical protein C54F6.6 - Caenorhabditis elegans 3.0E-44
blast NP_001023737 C54F6.15 [Caenorhabditis elegans] gb|AAX22291.1| Hypothetical protein C54F6.15 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504937.2 1 90-112
C54F6.6 1 90-112
GENEFINDER00000031635 2 5-27,39-58
Sequence
Target Sequence 
>C. ELEGANS:184173_AT
tattgccgtttctgaagcttttgacaaaggacttgcactgaaatgtattggaaaatgtat
tactgtgtcatctgttcaagaatggaaggattgcggatctaaatgtttcgaaggaggaga
aaaagttgaccaggcgttcttcgaatgcgactcaaaatgtgttgataagtatttcaaacc
ggatcaggacaacactgaggttatcgaattgaccaaaatgacttcaaaaattatttttct
ctgtattattcttttaattttaattcaacttgcatctgcggatttctcatgcttttttgg
agatttcatttgtaagcatattacttgccggatgaattttaattttcaaattttgatttc
aacagtttttattgcccttgcattttctgctgacagaaaacctataatcgattgtgtaac
tgcgtgtattcacaaggagtccttagcagattggaacaactgtgctccaaaatgcttttc
cagttctcccgataaaaaagatgaaaactatttgaaatgtgaaacaaaatgtgctaaact
tcggttcacgatggaagaggatgatgccaagttttcagatttcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCCGTTTCTGAAGCTTTTGAC 373 659 51 Antisense
GTATTACTGTGTCATCTGTTCAAGA 189 453 107 Antisense
GAAAAAGTTGACCAGGCGTTCTTCG 696 353 169 Antisense
AGGCGTTCTTCGAATGCGACTCAAA 141 55 182 Antisense
TATTTTTCTCTGTATTATTCTTTTA 159 663 282 Antisense
TCAACTTGCATCTGCGGATTTCTCA 576 629 315 Antisense
TTATTGCCCTTGCATTTTCTGCTGA 464 679 419 Antisense
ATCGATTGTGTAACTGCGTGTATTC 633 35 457 Antisense
GCGTGTATTCACAAGGAGTCCTTAG 315 291 472 Antisense
AATGTGCTAAACTTCGGTTCACGAT 618 159 578 Antisense
GATGCCAAGTTTTCAGATTTCGAGA 579 415 613 Antisense
Sequence Source Affymetrix Proprietary Database