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[184172_at]

Description F16B12.4 /REP_DB=WormBase Gene ID /WP=CE09427 /TR=Q93517 /GB=CAB02961.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 63      4grp_total > 01      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 116.4
(0.3)
P 		99.1
(-3)
A 		130.2
(3)
P 		127.4
(2.5)
P 		31
B 97.8
(-2.2)
P 		85.9
(-3)
P 		87
(-2.9)
P 		176
(3)
P 		90
C 135
(-1.4)
P 		103.4
(-3)
P 		113.8
(-2.5)
P 		225.6
(3)
P 		122
avr 116.4
(-1.5) 		96.1
(-3) 		110.3
(-1.9) 		176.3
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 96.2
(-3)
P 		112.3
(-2.2)
P 		210
(3)
P 		203.2
(2.6)
P 		96.8
(-3)
P 		130.3
(-1.2)
P 		114
B 133.7
(-1.1)
P 		137.3
(-0.7)
P 		117.3
(-3)
P 		146.5
(0.3)
P 		170.3
(3)
P 		128.4
(-1.7)
P 		53
C 89.4
(-3)
P 		161.1
(3)
P 		145.8
(1.7)
P 		146.4
(1.8)
P 		113.1
(-1)
P 		140.7
(1.3)
P 		72
avr 106.4
(-3) 		136.9
(0.1) 		157.7
(2.2) 		165.4
(3) 		126.7
(-0.9) 		133.1
(-0.3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 42.4
(3)
P 		21.5
(-2.3)
A 		34
(0.9)
P 		18.7
(-3)
P 		24
B 31.2
(0.8)
P 		21.2
(-2.7)
P 		20.2
(-3)
P 		37.5
(3)
P 		17
C 44.7
(3)
P 		29.7
(-3)
P 		39.7
(1)
P 		38
(0.3)
P 		15
avr 39.4
(3) 		24.1
(-3) 		31.3
(-0.2) 		31.4
(-0.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 17.7
(-3)
P 		39.9
(0.9)
P 		45.7
(2)
P 		51.5
(3)
P 		29.2
(-1)
P 		31.7
(-0.5)
P 		34
B 46.5
(-0.3)
P 		45.7
(-0.5)
P 		28.5
(-3)
P 		38.8
(-1.5)
P 		69.2
(3)
P 		47.9
(-0.1)
P 		41
C 33.1
(-1.9)
P 		49.2
(3)
P 		37.1
(-0.7)
P 		29.4
(-3)
P 		36.6
(-0.8)
P 		47.1
(2.4)
P 		20
avr 32.4
(-3) 		44.9
(3) 		37.1
(-0.8) 		39.9
(0.6) 		45
(3) 		42.2
(1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17430
Sequence Type Exemplar sequence
Representative Public ID F16B12.4 NCBI
Target Description F16B12.4 /REP_DB=WormBase Gene ID /WP=CE09427 /TR=Q93517 /GB=CAB02961.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077946
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024898 ENSEMBL cdna:SNAP chromosome:CEL140:X:14096090:14098575:-1 11/11 None
GENEFINDER00000024913 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14096090:14098575:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077946 7/11 Cross Hyb Matching Probes None
F16B12.4 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14096089-14098575(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02961 Hypothetical protein F16B12.4 [Caenorhabditis elegans] ref|NP_510347.2| F16B12.4 [Caenorhabditis elegans] 1.0E-128
blast AAD14770 Hypothetical protein H25P19.1 [Caenorhabditis elegans] ref|NP_503295.2| H25P19.1 [Caenorhabditis elegans] 7.0E-19
blast CAE62230 Hypothetical protein CBG06282 [Caenorhabditis briggsae] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184172_AT
gcgagagactggtcttccgacagaagttaaagagtatgcttttcaaaaaaacaacggtag
atatcaatctgaacccgcaagtacattagcactgctgatttgtaaacagtcatttttcaa
ggcatttggaatctgctcattcaacgattataacgtcgccgaaacgattgaaatgagcaa
agatttcgtcgtccctgacatgatcccgcagtttgttcaagacatttttgttgcgaaaat
tgccgagaccagagacgctttcaaacaaaagaaaacacattccgccgagtttaaggaatt
ttatcttgcagagctgtttcataacattgtcgagccaaagcttctggtggagaattacta
caatcaaaagaacaaaattggaaacaactggagaatggatagggtcgaagagcaaatgac
ggatgaggagagacagattctggaggagaagatgaaagcttgcaatatcagtattattga
atctcatcatgtcaaaaaaagccataagagaaaacgtaataaggagatcgacgcgtgcaa
acagccgcgcaactacaaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGAGACTGGTCTTCCGACAGAA 247 289 312 Antisense
ATATCAATCTGAACCCGCAAGTACA 501 19 372 Antisense
CCCGCAAGTACATTAGCACTGCTGA 234 261 385 Antisense
AACAGTCATTTTTCAAGGCATTTGG 499 137 416 Antisense
GGCATTTGGAATCTGCTCATTCAAC 74 537 432 Antisense
AATGAGCAAAGATTTCGTCGTCCCT 472 165 483 Antisense
CTGACATGATCCCGCAGTTTGTTCA 151 239 506 Antisense
TGCCGAGACCAGAGACGCTTTCAAA 265 585 552 Antisense
GTCGAGCCAAAGCTTCTGGTGGAGA 337 473 640 Antisense
AGGAGATCGACGCGTGCAAACAGCC 111 57 833 Antisense
CAAACAGCCGCGCAACTACAAGGAA 390 191 849 Antisense
Sequence Source Affymetrix Proprietary Database