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[184171_at]

Description Y51B9A.4 /REP_DB=WormBase Gene ID /WP=CE19214 /TR=Q9XXC4 /GB=CAA19538.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4.5
(0.2)
A 		2.9
(-3)
A 		5.9
(3)
A 		3.3
(-2.2)
A 		3
B 3.9
(-2.9)
A 		37.4
(3)
A 		6.9
(-2.4)
A 		3.6
(-3)
A 		34
C 4.3
(-3)
A 		6.7
(-2.4)
A 		4.3
(-3)
A 		29.3
(3)
A 		25
avr 4.2
(-3) 		15.7
(3) 		5.7
(-2.2) 		12.1
(1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 7.5
(-2.2)
A 		5.8
(-2.5)
A 		2.9
(-3)
A 		35.6
(2.6)
A 		28.6
(1.4)
A 		38
(3)
A 		35
B 4.7
(-3)
A 		5.5
(-2.8)
A 		5.9
(-2.7)
A 		16.5
(-0.2)
A 		6.8
(-2.5)
A 		29.6
(3)
A 		25
C 1.8
(-3)
A 		2.4
(-2.9)
A 		7.9
(-2.2)
A 		5.8
(-2.5)
A 		11.1
(-1.8)
A 		48.3
(3)
A 		47
avr 4.7
(-3) 		4.6
(-3) 		5.6
(-2.8) 		19.3
(-0.4) 		15.5
(-1.1) 		38.6
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(3)
A 		0.6
(-2.5)
A 		1.5
(2.5)
A 		0.5
(-3)
A 		1
B 1.2
(-2.7)
A 		9.2
(3)
A 		1.6
(-2.4)
A 		0.8
(-3)
A 		8
C 1.4
(-3)
A 		1.9
(-2.1)
A 		1.5
(-2.8)
A 		4.9
(3)
A 		4
avr 1.4
(-3) 		3.9
(3) 		1.5
(-2.8) 		2.1
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.4
(-2.4)
A 		2.1
(-2)
A 		0.6
(-3)
A 		9
(2.8)
A 		8.6
(2.5)
A 		9.3
(3)
A 		9
B 1.6
(-2.9)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		4.4
(-1.1)
A 		2.8
(-2.1)
A 		11
(3)
A 		10
C 0.7
(-3)
A 		0.7
(-3)
A 		2
(-2.5)
A 		1.2
(-2.8)
A 		3.6
(-1.9)
A 		16.2
(3)
A 		16
avr 1.2
(-3) 		1.5
(-2.8) 		1.3
(-2.9) 		4.9
(-1) 		5
(-0.9) 		12.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3505
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.4 NCBI
Target Description Y51B9A.4 /REP_DB=WormBase Gene ID /WP=CE19214 /TR=Q9XXC4 /GB=CAA19538.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063607 NCBI Caenorhabditis elegans Y51B9A.4 (Y51B9A.4) mRNA, complete cds. 11/11 None
SNAP00000039077 ENSEMBL cdna:SNAP chromosome:CEL140:II:9407766:9408871:1 11/11 None
GENEFINDER00000039087 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9407766:9408871:1 11/11 None
Y51B9A.4 ENSEMBL cdna:known chromosome:CEL140:II:9407751:9408871:1 gene:Y51B9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9407762-9408868(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51B9A.4
Entrez Gene 174491 Entrez gene
SwissProt Q9XXC4 EMBL-EBI
WormBase CE19214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19538 Hypothetical protein Y51B9A.4 [Caenorhabditis elegans] ref|NP_496008.1| Y51B9A.4 [Caenorhabditis elegans] 0.0
blast CAE57957 Hypothetical protein CBG01016 [Caenorhabditis briggsae] 2.0E-88
blast CAE57953 Hypothetical protein CBG01012 [Caenorhabditis briggsae] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-31
Pfam IPR000698 EMBL-EBI Arrestin 2.8E-33
Sequence
Target Sequence 
>C. ELEGANS:184171_AT
gacaaatctgacactttctgagccaaaaatgatgaagtacgcggaatttgtcaagtcgaa
gaattctggaacgattttcaaagatggattgtttttgttgaagcttcacttttccaaacg
agcattcctcgcaggggagacaatccgagcacttgccatcatggagaatcattcaacaaa
accaatcattaatcttcgtttcgagctcattcaacaatcccattaccactctcgcccaca
gaaatcattgtgttctcttaacgattgtcactccgactgcccaattgaatccaaatatcg
aagagatggtgaaacagtgctccgcggagccaattacagttgtgacgtcgcacctggtga
ggtgaaatatatcaatgtggagattgatctgccaaatggactcccgccaactttcgaatc
tccaatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAATCTGACACTTTCTGAGCCA 132 367 408 Antisense
GAAGCTTCACTTTTCCAAACGAGCA 489 341 507 Antisense
GAGCATTCCTCGCAGGGGAGACAAT 430 389 527 Antisense
CAATCCGAGCACTTGCCATCATGGA 663 181 548 Antisense
CAATCATTAATCTTCGTTTCGAGCT 331 181 590 Antisense
GTTCTCTTAACGATTGTCACTCCGA 415 441 659 Antisense
TCCGACTGCCCAATTGAATCCAAAT 595 589 679 Antisense
GAGATGGTGAAACAGTGCTCCGCGG 656 395 710 Antisense
TTACAGTTGTGACGTCGCACCTGGT 617 677 741 Antisense
ATTGATCTGCCAAATGGACTCCCGC 143 5 790 Antisense
CGCCAACTTTCGAATCTCCAATGAT 429 257 812 Antisense
Sequence Source Affymetrix Proprietary Database