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[184170_at]

Description F47B8.10 /REP_DB=WormBase Gene ID /WP=CE10650 /TR=Q20523 /GB=CAB01198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 226.6
(3)
P 		39.9
(-2.9)
A 		37.5
(-3)
A 		181.9
(1.6)
P 		189
B 243.6
(3)
P 		64
(-2.2)
A 		34.5
(-3)
A 		236.7
(2.8)
P 		209
C 210
(2.1)
P 		28.3
(-3)
A 		37
(-2.8)
A 		242.7
(3)
P 		214
avr 226.7
(3) 		44.1
(-2.8) 		36.3
(-3) 		220.4
(2.8) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 135
(1.7)
P 		156.1
(3)
P 		140.1
(2)
P 		106.8
(-0)
P 		71.5
(-2.2)
P 		58.8
(-3)
A 		97
B 184.8
(3)
P 		152.2
(1.7)
P 		110.7
(0)
P 		103.3
(-0.3)
P 		95.9
(-0.6)
M 		35.1
(-3)
A 		150
C 162.5
(2.7)
P 		169.7
(3)
P 		106.1
(0.4)
P 		118.6
(0.9)
P 		63.8
(-1.3)
M 		22.6
(-3)
A 		147
avr 160.8
(3) 		159.3
(2.9) 		119
(0.9) 		109.6
(0.5) 		77.1
(-1.1) 		38.8
(-3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 82.5
(3)
P 		8.7
(-3)
A 		9.8
(-2.9)
A 		26.6
(-1.5)
P 		74
B 77.7
(3)
P 		15.8
(-2.3)
A 		8
(-3)
A 		50.4
(0.6)
P 		70
C 69.5
(3)
P 		8.1
(-3)
A 		12.9
(-2.5)
A 		40.9
(0.2)
P 		61
avr 76.6
(3) 		10.9
(-2.9) 		10.2
(-3) 		39.3
(-0.4) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 24.9
(-1.5)
P 		55.5
(3)
P 		30.5
(-0.6)
P 		27.1
(-1.1)
P 		21.6
(-1.9)
P 		14.3
(-3)
A 		41
B 64.3
(3)
P 		50.6
(1.4)
P 		26.9
(-1.4)
P 		27.4
(-1.3)
P 		39
(0)
M 		13.1
(-3)
A 		51
C 60.2
(3)
P 		51.8
(2)
P 		27
(-0.8)
P 		23.8
(-1.2)
P 		20.7
(-1.5)
M 		7.6
(-3)
A 		53
avr 49.8
(2.6) 		52.6
(3) 		28.1
(-0.6) 		26.1
(-0.9) 		27.1
(-0.7) 		11.7
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14149
Sequence Type Exemplar sequence
Representative Public ID F47B8.10 NCBI
Target Description F47B8.10 /REP_DB=WormBase Gene ID /WP=CE10650 /TR=Q20523 /GB=CAB01198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074155 NCBI Caenorhabditis elegans F47B8.10 (F47B8.10) mRNA, complete cds. 11/11 None
SNAP00000011445 ENSEMBL cdna:SNAP chromosome:CEL140:V:14345785:14347967:1 11/11 None
GENEFINDER00000011456 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14345154:14349555:1 11/11 None
F47B8.10 ENSEMBL cdna:known chromosome:CEL140:V:14345656:14348248:1 gene:F47B8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14345784-14347967(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.10
Entrez Gene 179932 Entrez gene
SwissProt Q20523 EMBL-EBI
WormBase CE10650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603263_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 cfa
CANINE_2:CFA.14065.1.S1_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 cfa
CANINE_2:CFAAFFX.19205.1.S1_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 cfa
CHICKEN:GGAAFFX.22340.1.S1_AT similar to glucose 6-phosphate translocase gga
CHICKEN:GGAAFFX.22340.1.S1_S_AT similar to glucose 6-phosphate translocase gga
HG-U133_PLUS_2:217289_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U133A_2:217289_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-FOCUS:217289_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U133A:217289_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HU35KSUBA:RC_AA490159_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U133A:202830_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U133_PLUS_2:202830_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U133A_2:202830_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
U133_X3P:G4503846_3P_A_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
U133_X3P:HS.242.1.S1_3P_S_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
HG-U95AV2:33921_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 hs
MG-U74AV2:97430_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 mm
MG-U74BV2:164733_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 mm
MOE430A:1417042_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 mm
MOUSE430A_2:1417042_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 mm
MOUSE430_2:1417042_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 mm
MU19KSUBA:TC24743_AT Solute carrier family 37 (glycerol-6-phosphate transporter), member 4 (Slc37a4), mRNA mm
MU19KSUBB:TC31990_AT Solute carrier family 37 (glycerol-6-phosphate transporter), member 4 (Slc37a4), mRNA mm
RG-U34A:AF080468_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 rn
RG-U34A:AF080468_G_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 rn
RAE230A:1386960_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 rn
RAT230_2:1386960_AT solute carrier family 37 (glycerol-6-phosphate transporter), member 4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01198 Hypothetical protein F47B8.10 [Caenorhabditis elegans] ref|NP_506556.1| F47B8.10 [Caenorhabditis elegans] 0.0
blast CAE60917 Hypothetical protein CBG04634 [Caenorhabditis briggsae] 0.0
blast CAB01199 Hypothetical protein F47B8.11 [Caenorhabditis elegans] ref|NP_506557.1| Sperm-Specific family, class S family member (sss-2) [Caenorhabditis elegans] 2.0E-95
blast CAE62219 Hypothetical protein CBG06270 [Caenorhabditis briggsae] 1.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506556.1 12 7-29,44-63,72-94,98-120,133-150,160-177,206-223,246-268,281-298,303-325,338-360,364-386
F47B8.10 12 7-29,44-63,72-94,98-120,133-150,160-177,206-223,246-268,281-298,303-325,338-360,364-386
SNAP00000011445 12 7-29,44-63,72-94,98-120,133-150,160-177,206-223,246-268,281-298,303-325,338-360,364-386
GENEFINDER00000011456 12 47-69,84-103,153-175,179-201,214-231,241-258,287-304,327-349,362-379,384-406,419-441,445-467
Sequence
Target Sequence 
>C. ELEGANS:184170_AT
atcgtacacctgcctgatgatgttctcagcagccggaatttttgagtttgcggaattgag
ctcaatctttggattcttagctggaatgtttgttaatggatcgattaatgtttggtgcat
gattgcttcacaagctgggttctcgaaaattcaaggaactgtcagtgcattcatttcgtt
tattgccagctctggatcaatgcttgctggaacccctctagcatacctcatcagcgtttt
tggctggaaagtctttctctacatcttctcagttcaactcgtcatcgtcctctttgtatc
ttcattccgtgtacgtcttcgtatggatactacagaaaatgaagcatctaaaaatgaaat
agatgatgacgaaagttcaggagtttgcagtacagttgtagattctcaaagaaatttgac
aagtctcaataagaaaactagaatttcaatgttattagccctttacgcgacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTACACCTGCCTGATGATGTTC 608 35 864 Antisense
GATGATGTTCTCAGCAGCCGGAATT 535 411 879 Antisense
TGCTTCACAAGCTGGGTTCTCGAAA 666 579 987 Antisense
GGAACTGTCAGTGCATTCATTTCGT 48 531 1018 Antisense
TTCATTTCGTTTATTGCCAGCTCTG 429 689 1033 Antisense
TGCCAGCTCTGGATCAATGCTTGCT 346 587 1047 Antisense
GCATACCTCATCAGCGTTTTTGGCT 41 309 1084 Antisense
TGGAAAGTCTTTCTCTACATCTTCT 526 547 1108 Antisense
TCTACATCTTCTCAGTTCAACTCGT 596 613 1121 Antisense
CTCTTTGTATCTTCATTCCGTGTAC 302 229 1153 Antisense
TGTTATTAGCCCTTTACGCGACGAA 688 557 1313 Antisense
Sequence Source Affymetrix Proprietary Database