[Home] | [Total List]

[184166_at]

Description F43C9.1 /REP_DB=WormBase Gene ID /WP=CE04564 /TR=Q20359 /GB=AAA81469.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_high_8_8 > 54      6grp_highest_nonorm > 62      6grp_total > 51      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 112
(-1.2)
P 		147.7
(0.4)
P 		204.7
(3)
P 		73.2
(-3)
P 		132
B 57.9
(-2.9)
P 		222.4
(3)
P 		197.8
(2.1)
P 		55.1
(-3)
A 		167
C 112.4
(-2.6)
P 		157
(0)
P 		208.9
(3)
P 		104.8
(-3)
P 		104
avr 94.1
(-2.2) 		175.7
(1.7) 		203.8
(3) 		77.7
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 361.1
(0.3)
P 		465.3
(1.8)
P 		519.7
(2.6)
P 		549.2
(3)
P 		285.1
(-0.8)
P 		134.3
(-3)
P 		415
B 337.2
(-0.8)
P 		434.9
(0.3)
P 		666.8
(3)
P 		558.8
(1.8)
P 		300.6
(-1.2)
P 		147.4
(-3)
P 		519
C 329.9
(-0.4)
P 		424.7
(0.8)
P 		595.9
(3)
P 		593.4
(3)
P 		286
(-1)
P 		130.7
(-3)
P 		465
avr 342.7
(-0.3) 		441.6
(1) 		594.1
(3) 		567.1
(2.6) 		290.6
(-1) 		137.5
(-3) 		457
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 40.8
(1.2)
P 		32.1
(0)
P 		53.5
(3)
P 		10.7
(-3)
P 		43
B 18.5
(-2.1)
P 		54.9
(3)
P 		45.8
(1.7)
P 		11.7
(-3)
A 		43
C 37.2
(-0.9)
P 		45.1
(-0)
P 		72.8
(3)
P 		17.7
(-3)
P 		55
avr 32.2
(-0.4) 		44
(1.2) 		57.4
(3) 		13.4
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 66.6
(-1.5)
P 		165.5
(3)
P 		113.2
(0.6)
P 		139.3
(1.8)
P 		86
(-0.6)
P 		32.7
(-3)
P 		133
B 117.3
(0.5)
P 		144.8
(2)
P 		161.9
(3)
P 		148
(2.2)
P 		122.1
(0.8)
P 		55
(-3)
P 		107
C 122.3
(1.4)
P 		129.6
(1.8)
P 		151.7
(3)
P 		119.3
(1.2)
P 		92.5
(-0.3)
P 		43.8
(-3)
P 		108
avr 102.1
(0.4) 		146.6
(3) 		142.3
(2.7) 		135.5
(2.4) 		100.2
(0.3) 		43.8
(-3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17137
Sequence Type Exemplar sequence
Representative Public ID F43C9.1 NCBI
Target Description F43C9.1 /REP_DB=WormBase Gene ID /WP=CE04564 /TR=Q20359 /GB=AAA81469.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076418 NCBI Caenorhabditis elegans F43C9.1 (F43C9.1) mRNA, complete cds. 11/11 None
SNAP00000037149 ENSEMBL cdna:SNAP chromosome:CEL140:X:4793480:4795899:1 11/11 None
GENEFINDER00000037154 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4793480:4795899:1 11/11 None
F43C9.1 ENSEMBL cdna:known chromosome:CEL140:X:4793257:4796123:1 gene:F43C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4793480-4795900(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C9.1
Entrez Gene 180754 Entrez gene
SwissProt Q20359 EMBL-EBI
WormBase CE04564 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81469 Hypothetical protein F43C9.1 [Caenorhabditis elegans] ref|NP_508819.1| F43C9.1 [Caenorhabditis elegans] 0.0
blast CAE68650 Hypothetical protein CBG14544 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-8
Sequence
Target Sequence 
>C. ELEGANS:184166_AT
tgtccgattatctgccgatgtagccacagaagtcaagcaactttttgacattgcgctcta
ccaatgcgagaatgtaactgtggaaaactcgaatctcccaatctccttccactcagacag
tttgaaatctgcaaagttcgatcacttccgctggatttcctctactggatcaaaaactct
tccctctgatattatcctccgaaagctgcaaaatgacatgaaaaatgcagtcaacaagcg
ttcgtttttggctgaaatggactctgtcagtgttgaagctgcttgcgattttgttgagga
atggcttcgtttgcccgttgcgtcattcttcaatctgtcgttccacaattgcgatgagac
ctggaaaacacgattcttggaggaatgtgaacggcgccatttgacacataactatatgga
atttcagtcgagaacgcacacgaattcacacgtgaaaatcagcttctcacaggacgctag
tacgtgctgcatttggccagtttttgacgtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCGATTATCTGCCGATGTAGCC 411 557 408 Antisense
ACTTTTTGACATTGCGCTCTACCAA 391 103 447 Antisense
TCTCCTTCCACTCAGACAGTTTGAA 687 609 509 Antisense
CGCTGGATTTCCTCTACTGGATCAA 90 255 556 Antisense
AAAACTCTTCCCTCTGATATTATCC 168 131 580 Antisense
TGAGGAATGGCTTCGTTTGCCCGTT 410 567 702 Antisense
TTGCGTCATTCTTCAATCTGTCGTT 676 701 725 Antisense
AACGGCGCCATTTGACACATAACTA 571 143 797 Antisense
AATCAGCTTCTCACAGGACGCTAGT 705 169 864 Antisense
GACGCTAGTACGTGCTGCATTTGGC 19 381 880 Antisense
GCATTTGGCCAGTTTTTGACGTCCC 632 307 896 Antisense
Sequence Source Affymetrix Proprietary Database