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[184165_at]

Description F26D10.8 /REP_DB=WormBase Gene ID /WP=CE19808 /TR=Q9XVU0 /GB=CAB02320.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_total > 71      4grp_total > 34      6grp_cgc > 76      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 83.7
(-3)
P 		127.3
(0.8)
P 		124.6
(0.5)
P 		153
(3)
P 		69
B 95.1
(-1.4)
P 		142.8
(3)
P 		77.3
(-3)
P 		91.1
(-1.7)
P 		66
C 69.1
(-3)
P 		102.6
(0.6)
P 		104.4
(0.7)
P 		125.7
(3)
P 		57
avr 82.6
(-3) 		124.2
(3) 		102.1
(-0.2) 		123.3
(2.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 86.5
(-0.5)
A 		64.2
(-3)
P 		84.1
(-0.8)
P 		118.3
(3)
P 		106.7
(1.7)
P 		97.3
(0.7)
P 		54
B 62
(-3)
A 		126.6
(3)
P 		71.7
(-2.1)
A 		95.9
(0.1)
P 		80.6
(-1.3)
P 		85.6
(-0.8)
P 		65
C 93.4
(-1.1)
P 		69.7
(-3)
A 		142.7
(3)
P 		127.2
(1.7)
M 		96.6
(-0.8)
P 		96.9
(-0.8)
P 		73
avr 80.6
(-3) 		86.8
(-1.9) 		99.5
(0.4) 		113.8
(3) 		94.6
(-0.5) 		93.3
(-0.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 30.5
(1.8)
P 		27.6
(0.1)
P 		32.6
(3)
P 		22.4
(-3)
P 		10
B 30.3
(1.3)
P 		35.3
(3)
P 		17.9
(-3)
P 		19.4
(-2.5)
P 		17
C 22.9
(-2.3)
P 		29.5
(0.3)
P 		36.4
(3)
P 		21.2
(-3)
P 		15
avr 27.9
(1.2) 		30.8
(3) 		29
(1.9) 		21
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16
(-3)
A 		22.8
(-0.5)
P 		18.3
(-2.1)
P 		30
(2.2)
P 		32.2
(3)
P 		23.7
(-0.1)
P 		16
B 21.6
(-2)
A 		42.1
(3)
P 		17.4
(-3)
A 		25.4
(-1.1)
P 		32.7
(0.7)
P 		31.9
(0.5)
P 		25
C 34.6
(2.3)
P 		21.3
(-3)
A 		36.3
(3)
P 		25.6
(-1.3)
M 		31.3
(1)
P 		32.4
(1.4)
P 		15
avr 24.1
(-2.9) 		28.7
(0.5) 		24
(-3) 		27
(-0.8) 		32.1
(3) 		29.3
(0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8418
Sequence Type Exemplar sequence
Representative Public ID F26D10.8 NCBI
Target Description F26D10.8 /REP_DB=WormBase Gene ID /WP=CE19808 /TR=Q9XVU0 /GB=CAB02320.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070662 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-187) (str-187) mRNA, complete cds. 11/11 None
SNAP00000006837 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17265651:17266881:1 11/11 None
GENEFINDER00000006854 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17265651:17266881:1 11/11 None
F26D10.8 ENSEMBL cdna:known chromosome:CEL140:IV:17265534:17266881:1 gene:F26D10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17265539-17266887(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-187
Ensembl F26D10.8
Entrez Gene 184970 Entrez gene
SwissProt Q9XVU0 EMBL-EBI
WormBase CE19808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02320 Hypothetical protein F26D10.8 [Caenorhabditis elegans] ref|NP_503063.1| Seven TM Receptor family member (str-187) [Caenorhabditis elegans] 0.0
blast CAB02320 Hypothetical protein F26D10.8 [Caenorhabditis elegans] ref|NP_503063.1| Seven TM Receptor family member (str-187) [Caenorhabditis elegans] 1.0E-178
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 1.0E-128
blast CAA94768 Hypothetical protein F40F9.4 [Caenorhabditis elegans] ref|NP_505504.1| Seven TM Receptor family member (str-188) [Caenorhabditis elegans] 1.0E-124
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503063.1 7 4-26,48-70,85-107,128-150,203-225,245-267,277-299
F26D10.8 7 4-26,48-70,85-107,128-150,203-225,245-267,277-299
SNAP00000006837 6 9-31,46-68,89-111,164-186,206-228,238-260
GENEFINDER00000006854 6 9-31,46-68,89-111,164-186,206-228,238-260
Sequence
Target Sequence 
>C. ELEGANS:184165_AT
tcagcttggattggcgtgtctcagatgtggtttatgattatgtcctccatgtcatgcatc
ttcggctttgcaatcctttgctatttgcgtcttagagctcaactatctatagtatcaagt
gcagttaacaaccttcagcttcaatttttctatgctcttgtgctccaaaccgccattcca
ttaattctcatgcatataccaattactatatattttgtgtgcccgatgctcgatctggat
ttggatattgctagctcatttgttgcctctaccatcaccttgtacccggctattgatcca
ttgccgagctttttgataatcaaaagctttaggaatgcgacaattgacgtttttcaacaa
gttttctgttgtcggcctggaaataagtatcgagttcgaccagctattacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCTTGGATTGGCGTGTCTCAGA 698 623 595 Antisense
TGATTATGTCCTCCATGTCATGCAT 179 565 629 Antisense
GTCATGCATCTTCGGCTTTGCAATC 357 467 645 Antisense
CAATCCTTTGCTATTTGCGTCTTAG 145 183 665 Antisense
ACAACCTTCAGCTTCAATTTTTCTA 329 113 722 Antisense
ATTTTTCTATGCTCTTGTGCTCCAA 359 15 738 Antisense
AACCGCCATTCCATTAATTCTCATG 61 147 762 Antisense
ATATTTTGTGTGCCCGATGCTCGAT 564 19 804 Antisense
TATTGCTAGCTCATTTGTTGCCTCT 590 665 840 Antisense
TTGTACCCGGCTATTGATCCATTGC 69 707 874 Antisense
TATCGAGTTCGACCAGCTATTACAA 433 655 982 Antisense
Sequence Source Affymetrix Proprietary Database