[Home] | [Total List]

[184163_at]

Description ZC239.4 /REP_DB=WormBase Gene ID /WP=CE15118 /TR=P91558 /GB=AAB37941.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 5.8
(-1.8)
A 		20.5
(3)
A 		2.2
(-3)
A 		8.9
(-0.8)
A 		18
B 4.1
(-3)
A 		5.5
(-1.3)
A 		9
(3)
A 		5.9
(-0.8)
A 		5
C 6
(-3)
A 		8.7
(-2.1)
A 		12.4
(-0.9)
A 		24.5
(3)
A 		19
avr 5.3
(-3) 		11.6
(1.8) 		7.9
(-1) 		13.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 10.1
(-2.1)
A 		5.1
(-3)
A 		36.8
(3)
M 		10.1
(-2.1)
A 		25.8
(0.9)
A 		5.4
(-2.9)
A 		32
B 25.2
(2.1)
P 		26
(2.3)
M 		5.3
(-2.5)
A 		3.2
(-3)
A 		29
(3)
A 		26.8
(2.5)
A 		26
C 35.8
(3)
A 		32
(2.3)
A 		4.6
(-2.8)
A 		21.2
(0.3)
A 		3.4
(-3)
A 		21.7
(0.4)
A 		32
avr 23.7
(3) 		21
(1.7) 		15.6
(-1) 		11.5
(-3) 		19.4
(0.9) 		18
(0.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(-0.6)
A 		4.4
(3)
A 		0.6
(-3)
A 		1.3
(-1.9)
A 		4
B 1.3
(-3)
A 		1.4
(-2.3)
A 		2.1
(3)
A 		1.3
(-3)
A 		1
C 2
(-3)
A 		2.5
(-1.7)
A 		4.3
(3)
A 		4.1
(2.5)
A 		2
avr 1.8
(-3) 		2.8
(3) 		2.3
(-0) 		2.2
(-0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-2.5)
A 		1.8
(-2.6)
A 		8
(3)
M 		2.6
(-1.8)
A 		7.8
(2.8)
A 		1.3
(-3)
A 		7
B 8.8
(1.4)
P 		8.7
(1.3)
M 		1.3
(-2.7)
A 		0.8
(-3)
A 		11.8
(3)
A 		10
(2)
A 		11
C 13.3
(3)
A 		9.8
(1.3)
A 		1.2
(-3)
A 		4.3
(-1.4)
A 		1.1
(-3)
A 		7.3
(0)
A 		12
avr 8
(3) 		6.8
(1.7) 		3.5
(-2) 		2.6
(-3) 		6.9
(1.8) 		6.2
(1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5006
Sequence Type Exemplar sequence
Representative Public ID ZC239.4 NCBI
Target Description ZC239.4 /REP_DB=WormBase Gene ID /WP=CE15118 /TR=P91558 /GB=AAB37941.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062075(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062075 NCBI Caenorhabditis elegans ZC239.4 (ZC239.4) mRNA, complete cds. 10/11 None
GENEFINDER00000024305 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3214447:3215415:1 10/11 None
ZC239.4 ENSEMBL cdna:known chromosome:CEL140:II:3214447:3215415:1 gene:ZC239.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3214445-3215277(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.4
Entrez Gene 191121 Entrez gene
SwissProt P91558 EMBL-EBI
WormBase CE37458 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37941 Hypothetical protein ZC239.4 [Caenorhabditis elegans] ref|NP_494476.2| ZC239.4 [Caenorhabditis elegans] 1.0E-133
blast AAB37956 Hypothetical protein ZC239.14 [Caenorhabditis elegans] ref|NP_494479.1| ZC239.14 [Caenorhabditis elegans] 5.0E-49
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.7E-35
Sequence
Target Sequence 
>C. ELEGANS:184163_AT
gggctgaatgttgacgaatccggctgtatttttattgatcgttccccaaaacactttgac
ctgatattgaacttcatgagggatggttgtttggcacttcccaaaaatgaaagagatctg
acagaactgatggcagaagctcaatactatttgttggatggactgatagaccgactggcg
tcaagcaattggtcagtcgagtcagacgaaaaaactatcaatgttgcaaagagacttcca
attcttgaaaataactcacaatttcttcaagttctgtgcaatcaagagaagccaattcta
ttaatcgttgttatggcgtccagagatcatttttttcctaatatgtcaattcctgatggc
ttcaatgcatataaatttgtagagaaatattcacatcaatttcatatctacttcatgtca
acttttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTGAATGTTGACGAATCCGGCT 168 493 121 Antisense
GAATCCGGCTGTATTTTTATTGATC 700 329 136 Antisense
TCGTTCCCCAAAACACTTTGACCTG 281 599 159 Antisense
GGGATGGTTGTTTGGCACTTCCCAA 37 497 200 Antisense
GATGGACTGATAGACCGACTGGCGT 313 407 277 Antisense
GGCGTCAAGCAATTGGTCAGTCGAG 634 539 297 Antisense
AATTTCTTCAAGTTCTGTGCAATCA 707 173 380 Antisense
GGCGTCCAGAGATCATTTTTTTCCT 318 541 435 Antisense
TGTCAATTCCTGATGGCTTCAATGC 167 559 464 Antisense
TTCACATCAATTTCATATCTACTTC 113 687 510 Antisense
ATCTACTTCATGTCAACTTTTGTGG 226 33 526 Antisense
Sequence Source Affymetrix Proprietary Database