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[184160_at]

Description C04F12.9 /REP_DB=WormBase Gene ID /WP=CE19682 /TR=Q9XVE6 /GB=CAB03838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 84      6grp_total > 74      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 176.4
(-3)
A 		429.9
(3)
P 		266.1
(-0.9)
P 		240
(-1.5)
P 		254
B 130.2
(-3)
A 		371.5
(3)
P 		283.5
(0.8)
P 		209.4
(-1)
P 		241
C 176.7
(-3)
M 		384.7
(3)
P 		322.8
(1.2)
P 		222.3
(-1.7)
P 		208
avr 161.1
(-3) 		395.4
(3) 		290.8
(0.3) 		223.9
(-1.4) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 191.9
(-3)
P 		316.2
(-0.4)
P 		364.5
(0.7)
P 		474.9
(3)
P 		301.7
(-0.7)
P 		446.7
(2.4)
P 		283
B 172.6
(-3)
A 		298.7
(0.1)
P 		346.4
(1.3)
P 		316.2
(0.5)
P 		401.2
(2.6)
P 		417
(3)
P 		244
C 211.3
(-3)
A 		230.1
(-2.6)
P 		520.5
(3)
P 		485.3
(2.3)
P 		379.3
(0.3)
P 		443.2
(1.5)
P 		309
avr 191.9
(-3) 		281.7
(-0.8) 		410.5
(2.4) 		425.5
(2.8) 		360.7
(1.2) 		435.6
(3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 64.2
(0)
A 		93.3
(3)
P 		69.6
(0.6)
P 		35.1
(-3)
P 		58
B 41.5
(-3)
A 		91.8
(3)
P 		65.7
(-0.1)
P 		44.6
(-2.6)
P 		50
C 58.5
(-1.3)
M 		110.6
(2.8)
P 		112.5
(3)
P 		37.5
(-3)
P 		75
avr 54.7
(-1.4) 		98.6
(3) 		82.6
(1.4) 		39.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 35.4
(-3)
P 		112.4
(2.4)
P 		79.4
(0.1)
P 		120.4
(3)
P 		91.1
(0.9)
P 		108.8
(2.2)
P 		85
B 60.1
(-3)
A 		99.4
(-0.7)
P 		84.1
(-1.6)
P 		83.7
(-1.6)
P 		163
(3)
P 		155.5
(2.6)
P 		103
C 78.3
(-2.4)
A 		70.2
(-3)
P 		132.5
(1.8)
P 		97.6
(-0.9)
P 		122.7
(1)
P 		148.4
(3)
P 		78
avr 57.9
(-3) 		94
(-0.3) 		98.7
(0.1) 		100.6
(0.2) 		125.6
(2.1) 		137.6
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2459
Sequence Type Exemplar sequence
Representative Public ID C04F12.9 NCBI
Target Description C04F12.9 /REP_DB=WormBase Gene ID /WP=CE19682 /TR=Q9XVE6 /GB=CAB03838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060180 NCBI Caenorhabditis elegans C04F12.9 (C04F12.9) mRNA, complete cds. 11/11 None
SNAP00000037408 ENSEMBL cdna:SNAP chromosome:CEL140:I:9718281:9718864:-1 11/11 None
GENEFINDER00000037411 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9718281:9718864:-1 11/11 None
C04F12.9 ENSEMBL cdna:known chromosome:CEL140:I:9718281:9718864:-1 gene:C04F12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9718211-9718795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04F12.9
Entrez Gene 182229 Entrez gene
SwissProt Q9XVE6 EMBL-EBI
WormBase CE19682 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4523 ribonuclease H activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03838 Hypothetical protein C04F12.9 [Caenorhabditis elegans] ref|NP_492581.1| C04F12.9 [Caenorhabditis elegans] 4.0E-70
blast CAE73405 Hypothetical protein CBG20847 [Caenorhabditis briggsae] 1.0E-29
blast AAH92118 Unknown (protein for MGC:115038) [Xenopus laevis] 9.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002156 EMBL-EBI RNase H 3.0E-24
Sequence
Target Sequence 
>C. ELEGANS:184160_AT
tccgctctcggaaacggccaacaaggctccagaggaggctatggagttcacgttccaagt
gatacatcgaagaatgtgagtggctcttatccacacggaccacaaaccaacaatcgatat
gagctggaagccatcaagcacgccacccaaatggctcgtgatgttccagacagccacgtg
agaatccacactgattccaagaacgcgaaggattctgtcaccaaatggaatgacaactgg
aagtcgaatggctacaaaacttcttcgggacaagatgtgaagaatcaggatctcatcaga
gatatcgaccgcaatgttcaagcgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCTCTCGGAAACGGCCAACAAG 639 595 40 Antisense
AGAGGAGGCTATGGAGTTCACGTTC 99 69 70 Antisense
GTGAGTGGCTCTTATCCACACGGAC 479 483 115 Antisense
CACGGACCACAAACCAACAATCGAT 552 197 133 Antisense
TGAGCTGGAAGCCATCAAGCACGCC 632 567 159 Antisense
CACGCCACCCAAATGGCTCGTGATG 541 199 178 Antisense
GGCTCGTGATGTTCCAGACAGCCAC 623 539 192 Antisense
GACAGCCACGTGAGAATCCACACTG 675 367 208 Antisense
ATCCACACTGATTCCAAGAACGCGA 436 39 223 Antisense
GAACGCGAAGGATTCTGTCACCAAA 192 347 240 Antisense
TCGACCGCAATGTTCAAGCGCTCAA 213 603 344 Antisense
Sequence Source Affymetrix Proprietary Database