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[184159_at]

Description T05E12.6 /REP_DB=WormBase Gene ID /WP=CE16349 /TR=O45754 /GB=CAB04684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 56      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 858
1 2 3 4 range
A 37.7
(-2.9)
A 		239.7
(-1.4)
P 		867.9
(3)
P 		17.8
(-3)
A 		850
B 11.5
(-3)
A 		191.3
(-1.6)
M 		763
(3)
P 		19.5
(-2.9)
A 		752
C 10.3
(-3)
A 		263.5
(-0.9)
P 		720.8
(3)
P 		45.3
(-2.7)
A 		711
avr 19.8
(-3) 		231.5
(-1.3) 		783.9
(3) 		27.5
(-2.9) 		764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 102.1
(-3)
A 		145.1
(-2.2)
P 		227.4
(-0.7)
P 		432.4
(3)
P 		169.3
(-1.8)
P 		103.9
(-3)
A 		330
B 66.9
(-3)
A 		132
(-1.1)
P 		241.8
(2.2)
P 		269.5
(3)
P 		147.1
(-0.6)
P 		95.7
(-2.1)
A 		203
C 95.9
(-2.9)
A 		157
(-1.3)
P 		316.3
(3)
P 		304
(2.7)
P 		198.4
(-0.2)
P 		92.8
(-3)
A 		224
avr 88.3
(-3) 		144.7
(-1.6) 		261.8
(1.2) 		335.3
(3) 		171.6
(-1) 		97.5
(-2.8) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 13.7
(-2.7)
A 		52
(-1.7)
P 		226.9
(3)
P 		2.6
(-3)
A 		224
B 3.7
(-3)
A 		47.3
(-1.5)
M 		176.8
(3)
P 		4.2
(-3)
A 		173
C 3.4
(-3)
A 		75.8
(-1.2)
P 		251.2
(3)
P 		7.6
(-2.9)
A 		248
avr 6.9
(-2.9) 		58.4
(-1.5) 		218.3
(3) 		4.8
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 18.8
(-3)
A 		51.6
(-0.8)
P 		49.5
(-1)
P 		109.7
(3)
P 		51.1
(-0.9)
P 		25.3
(-2.6)
A 		91
B 23.3
(-3)
A 		43.9
(-0.4)
P 		58.7
(1.4)
P 		71.4
(3)
P 		59.8
(1.6)
P 		35.7
(-1.5)
A 		48
C 35.5
(-2.5)
A 		47.9
(-1)
P 		80.5
(3)
P 		61.1
(0.6)
P 		64.2
(1)
P 		31.1
(-3)
A 		49
avr 25.9
(-3) 		47.8
(-0.6) 		62.9
(1.1) 		80.7
(3) 		58.4
(0.6) 		30.7
(-2.5) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13036
Sequence Type Exemplar sequence
Representative Public ID T05E12.6 NCBI
Target Description T05E12.6 /REP_DB=WormBase Gene ID /WP=CE16349 /TR=O45754 /GB=CAB04684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074926 NCBI Caenorhabditis elegans T05E12.6 (T05E12.6) mRNA, complete cds. 11/11 A 
SNAP00000044444 ENSEMBL cdna:SNAP chromosome:CEL140:V:17090542:17091957:-1 11/11 None
GENEFINDER00000044446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17079493:17092062:-1 11/11 None
T05E12.6 ENSEMBL cdna:known chromosome:CEL140:V:17087277:17092601:-1 gene:T05E12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17090870-17092003(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E12.6
Entrez Gene 180136 Entrez gene
SwissProt O45754 EMBL-EBI
WormBase CE32485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04684 Hypothetical protein T05E12.6 [Caenorhabditis elegans] ref|NP_507327.2| T05E12.6 [Caenorhabditis elegans] 0.0
blast CAB04684 Hypothetical protein T05E12.6 [Caenorhabditis elegans] ref|NP_507327.2| T05E12.6 [Caenorhabditis elegans] 1.0E-146
blast CAB04686 Hypothetical protein T05E12.3 [Caenorhabditis elegans] ref|NP_507324.1| T05E12.3 [Caenorhabditis elegans] 1.0E-108
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 1.0E-105
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 1.0E-104
blast T24530 hypothetical protein T05E12.5 - Caenorhabditis elegans 6.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 6.7E-42
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-25
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 6.7E-42
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.3E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044446 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:184159_AT
tcacccggtggcaagatacaactctcgactggaaatcgggaagttggttttggatttgta
atttattgggatgaatacccaaatttcaccacaaattatttgaacatctcaaaatcaaat
aatttaccaccgatctatgcaattgaccttcaacaacaagtgttgatatctgcggaaact
agagtgtcattgaccattcaaccacccgttctgagtagtaaccttcagtatatgcgtggt
ttaattttttttgatggtcctgattggaattcaccttatttgggcactggcttagagctt
ttaaatttgaaatcacagtttgtgtccactggagcacaattaacagctttgtacattgga
aattccggtttcatcagcgactgtccgatgatagttctagactatgaaaataccaagaat
atcacacaattttatagcatttattgcatgaaagatcaagaatgtgaaccaatgagcatg
gatgcaaggaacagtgtagttgctctgcaattatatcatagacctgcggcagtacattac
gtgcttacggcgttaaacggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCCGGTGGCAAGATACAACTCT 100 625 343 Antisense
ACCACCGATCTATGCAATTGACCTT 271 85 468 Antisense
GAGTGTCATTGACCATTCAACCACC 533 401 524 Antisense
ATTCAACCACCCGTTCTGAGTAGTA 137 11 538 Antisense
GAGTAGTAACCTTCAGTATATGCGT 652 397 555 Antisense
GAATTCACCTTATTTGGGCACTGGC 314 325 609 Antisense
CACAGTTTGTGTCCACTGGAGCACA 5 195 656 Antisense
TCCGGTTTCATCAGCGACTGTCCGA 127 595 706 Antisense
GGAACAGTGTAGTTGCTCTGCAATT 472 529 830 Antisense
GACCTGCGGCAGTACATTACGTGCT 342 381 863 Antisense
TACGTGCTTACGGCGTTAAACGGTG 657 639 880 Antisense
Sequence Source Affymetrix Proprietary Database