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[184157_at]

Description K09H9.7 /REP_DB=WormBase Gene ID /WP=CE18042 /TR=O44993 /GB=AAB97573.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4
(-3)
A 		10.2
(-0)
A 		6.6
(-1.8)
A 		16.6
(3)
A 		13
B 8.1
(-1)
A 		7.9
(-1.2)
A 		6.2
(-3)
A 		11.8
(3)
A 		6
C 3.5
(-3)
A 		11
(-0.3)
A 		4.1
(-2.8)
A 		20
(3)
A 		17
avr 5.2
(-3) 		9.7
(-0.5) 		5.6
(-2.8) 		16.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 25.9
(3)
A 		3.5
(-3)
A 		9
(-1.5)
A 		4.8
(-2.7)
A 		23.1
(2.3)
A 		14.2
(-0.1)
A 		22
B 7.6
(-3)
A 		9.2
(-0.1)
A 		7.9
(-2.5)
A 		9.1
(-0.3)
A 		7.7
(-2.8)
A 		10.9
(3)
A 		3
C 2.8
(-3)
A 		10.9
(0.4)
A 		7.7
(-0.9)
A 		9.6
(-0.1)
A 		9.1
(-0.3)
A 		17
(3)
A 		14
avr 12.1
(1.2) 		7.9
(-2.9) 		8.2
(-2.6) 		7.8
(-3) 		13.3
(2.3) 		14
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.4
(-3)
A 		2.2
(1.8)
A 		1.7
(-1.2)
A 		2.4
(3)
A 		1
B 2.6
(3)
A 		2
(0)
A 		1.4
(-3)
A 		2.5
(2.5)
A 		1
C 1.1
(-3)
A 		3.2
(2.5)
A 		1.4
(-2.2)
A 		3.4
(3)
A 		2
avr 1.7
(-2.1) 		2.5
(1.6) 		1.5
(-3) 		2.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.8
(0.7)
A 		1.2
(-3)
A 		2
(-2.2)
A 		1.2
(-3)
A 		7
(3)
A 		3.5
(-0.6)
A 		6
B 2.6
(-1.1)
A 		3.1
(0.3)
A 		1.9
(-3)
A 		2.4
(-1.6)
A 		3.1
(0.3)
A 		4.1
(3)
A 		2
C 1
(-3)
A 		3.3
(-0.1)
A 		2
(-1.7)
A 		1.9
(-1.9)
A 		3
(-0.4)
A 		5.7
(3)
A 		5
avr 2.8
(-0.7) 		2.5
(-1.4) 		2
(-2.5) 		1.8
(-3) 		4.4
(3) 		4.4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.327
Sequence Type Exemplar sequence
Representative Public ID K09H9.7 NCBI
Target Description K09H9.7 /REP_DB=WormBase Gene ID /WP=CE18042 /TR=O44993 /GB=AAB97573.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058709 NCBI Caenorhabditis elegans K09H9.7 (K09H9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000035329 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3150779:3151997:-1 10/11 None
K09H9.7 ENSEMBL cdna:known chromosome:CEL140:I:3150779:3152327:-1 gene:K09H9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035325 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3150778-3152327(-) 99.81 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H9.7
Entrez Gene 187242 Entrez gene
SwissProt O44993 EMBL-EBI
WormBase CE18042 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491110 K09H9.7 [Caenorhabditis elegans] gb|AAB97573.1| Hypothetical protein K09H9.7 [Caenorhabditis elegans] 6.0E-92
blast NP_491110 K09H9.7 [Caenorhabditis elegans] gb|AAB97573.1| Hypothetical protein K09H9.7 [Caenorhabditis elegans] 7.0E-87
Sequence
Target Sequence 
>C. ELEGANS:184157_AT
gtcaaccgcagttttcgcaaacggaaaccagcgattcccaatgaattcgactgcagattc
tggaactttcgtcgcaaaatttaatgcatggatcgacttcatcggctccaaaaaggcgtt
cttcaccaatttgaaaattctcgctgagaatggaattcatgaatcagtgattcgagcact
cgttctgcacaatgcaaagctaccaatcccaaaatgtgttgcaacagagagttcagttga
aatttataattctgcaacaatttctggtattttctctgcgttctctgtgagatgctgcaa
gtgctccgataatgtgacaattccaaatctgtacaaacatatgaaacaacacgtcgagaa
gacgagatactcctgttccacgtgcagtggaagattcgaaacagaagaagcaggcctcca
tcatctcctgattcaccgcagacgaagaaacgtcaagctcttcgacgagtgggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACCGCAGTTTTCGCAAACGGA 372 463 15 Antisense
GAAACCAGCGATTCCCAATGAATTC 263 359 38 Antisense
GCAGATTCTGGAACTTTCGTCGCAA 636 311 67 Antisense
ATGCATGGATCGACTTCATCGGCTC 649 43 98 Antisense
GGCTCCAAAAAGGCGTTCTTCACCA 320 537 118 Antisense
GTGATTCGAGCACTCGTTCTGCACA 262 485 181 Antisense
TATTTTCTCTGCGTTCTCTGTGAGA 145 663 282 Antisense
GTGAGATGCTGCAAGTGCTCCGATA 426 483 301 Antisense
ATACTCCTGTTCCACGTGCAGTGGA 533 23 381 Antisense
ACAGAAGAAGCAGGCCTCCATCATC 209 109 415 Antisense
GTCAAGCTCTTCGACGAGTGGGATG 108 463 466 Antisense
Sequence Source Affymetrix Proprietary Database