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[184156_at]

Description K12B6.8 /REP_DB=WormBase Gene ID /WP=CE12178 /TR=O16387 /GB=AAB65921.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 10
(-2.1)
A 		24.9
(3)
A 		8.7
(-2.5)
A 		7.2
(-3)
A 		18
B 12.6
(-0.5)
A 		21.7
(3)
A 		6.3
(-3)
A 		12.4
(-0.6)
A 		15
C 5.1
(-2.7)
A 		23.4
(-0.5)
A 		2.1
(-3)
A 		53.7
(3)
A 		52
avr 9.2
(-1.9) 		23.3
(2.6) 		5.7
(-3) 		24.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 6
(-2.8)
A 		4.7
(-3)
A 		23.2
(-0.5)
A 		22.3
(-0.6)
A 		31.4
(0.6)
A 		48.9
(3)
A 		44
B 13.2
(-1)
A 		2
(-3)
A 		6.4
(-2.2)
A 		34.9
(3)
A 		12.2
(-1.1)
A 		29.5
(2)
A 		33
C 37
(2.3)
A 		5.4
(-3)
A 		41.4
(3)
A 		40.9
(2.9)
A 		11.9
(-1.9)
A 		31.4
(1.3)
A 		36
avr 18.7
(-0.3) 		4
(-3) 		23.7
(0.6) 		32.7
(2.3) 		18.5
(-0.3) 		36.6
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.6
(0.5)
A 		5.4
(3)
A 		2.3
(-1.3)
A 		1.1
(-3)
A 		4
B 4
(0.8)
A 		5.4
(3)
A 		1.5
(-3)
A 		2.6
(-1.3)
A 		4
C 1.7
(-2.3)
A 		6.7
(1.3)
A 		0.7
(-3)
A 		9.1
(3)
A 		8
avr 3.1
(-0.8) 		5.8
(3) 		1.5
(-3) 		4.3
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.7
(-2.7)
A 		5
(-0.8)
A 		5.7
(-0.4)
A 		9.5
(1.7)
A 		11.9
(3)
A 		11
B 4.6
(-0.7)
A 		0.7
(-3)
A 		1.6
(-2.5)
A 		9.2
(2)
A 		5
(-0.5)
A 		11
(3)
A 		10
C 13.7
(3)
A 		1.6
(-3)
A 		10.5
(1.4)
A 		8.2
(0.3)
A 		3.8
(-1.9)
A 		10.5
(1.4)
A 		12
avr 6.5
(0.2) 		1.3
(-3) 		5.7
(-0.3) 		7.7
(0.9) 		6.1
(-0.1) 		11.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12010
Sequence Type Exemplar sequence
Representative Public ID K12B6.8 NCBI
Target Description K12B6.8 /REP_DB=WormBase Gene ID /WP=CE12178 /TR=O16387 /GB=AAB65921.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072210 NCBI Caenorhabditis elegans K12B6.8 (K12B6.8) mRNA, complete cds. 11/11 None
SNAP00000011415 ENSEMBL cdna:SNAP chromosome:CEL140:V:6311184:6314595:-1 10/11 None
GENEFINDER00000011420 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6311405:6314595:-1 10/11 None
K12B6.8 ENSEMBL cdna:known chromosome:CEL140:V:6311405:6314595:-1 gene:K12B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6311404-6314595(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12B6.8
Entrez Gene 187320 Entrez gene
SwissProt O16387 EMBL-EBI
WormBase CE12178 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65921 Hypothetical protein K12B6.8 [Caenorhabditis elegans] ref|NP_504611.1| K12B6.8 [Caenorhabditis elegans] 0.0
blast AAB52930 Hypothetical protein F19B10.10 [Caenorhabditis elegans] ref|NP_494613.1| F19B10.10 [Caenorhabditis elegans] 1.0E-166
blast AAB52930 Hypothetical protein F19B10.10 [Caenorhabditis elegans] ref|NP_494613.1| F19B10.10 [Caenorhabditis elegans] 1.0E-165
blast AAB52930 Hypothetical protein F19B10.10 [Caenorhabditis elegans] ref|NP_494613.1| F19B10.10 [Caenorhabditis elegans] 1.0E-159
blast CAE74270 Hypothetical protein CBG21961 [Caenorhabditis briggsae] 8.0E-46
blast CAE74270 Hypothetical protein CBG21961 [Caenorhabditis briggsae] 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:184156_AT
tcctaagctagctgcattccttcacacccaaaaggcgtgccaccgaattcacggacttga
atcatcgtctccaatggttgaaaaacctcttcaccaaactcttctaggcttgttcgcagc
ccaagagcgtctgaaaaatgagaagccgttggaaaaagctggaactatggctaacaagtt
gattgcaatgagcactgatcctgctgtgaagagctctgcggagtatgagctggaaaagat
taccgctaagttcaaggtgtacatcaagatggtagatcgccacttggccatgcttcagaa
aaatccaaacattgctccggagacactaccaaaactccccgagttcccagtattctctgc
aaagtttttggaagattattataccgttactagaggccaacaaactgtagtccacgatgc
aatttgcgcaatctgtcacgatgaaatcatgacaaacgacaagtctgcaatcaagtgtga
acgatgcacgaagagcatccacgagaaatgtgccgcgccattgctccagcagagcgtcat
gtgtcccacttgcaagcagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTAAGCTAGCTGCATTCCTTCAC 534 591 1551 Antisense
ACGGACTTGAATCATCGTCTCCAAT 422 95 1601 Antisense
CTCTTCACCAAACTCTTCTAGGCTT 88 231 1637 Antisense
TTGTTCGCAGCCCAAGAGCGTCTGA 105 701 1660 Antisense
GATCCTGCTGTGAAGAGCTCTGCGG 253 417 1747 Antisense
ATGGTAGATCGCCACTTGGCCATGC 518 51 1819 Antisense
ATTGCTCCGGAGACACTACCAAAAC 400 3 1861 Antisense
GATGCAATTTGCGCAATCTGTCACG 256 413 1966 Antisense
GCATCCACGAGAAATGTGCCGCGCC 359 309 2045 Antisense
GCCATTGCTCCAGCAGAGCGTCATG 670 281 2067 Antisense
TCATGTGTCCCACTTGCAAGCAGAG 10 623 2087 Antisense
Sequence Source Affymetrix Proprietary Database