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[184154_at]

Description C30E1.3 /REP_DB=WormBase Gene ID /WP=CE08470 /TR=O17335 /GB=AAB71248.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 21.7
(-3)
A 		56.2
(0.3)
A 		25.4
(-2.6)
A 		84.1
(3)
A 		62
B 31.4
(0.7)
A 		6.8
(-3)
A 		40.6
(2.1)
A 		46.4
(3)
A 		40
C 9.9
(-3)
A 		9.4
(-3)
A 		9.9
(-3)
A 		124.7
(3)
A 		115
avr 21
(-3) 		24.1
(-2.7) 		25.3
(-2.6) 		85.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 26.7
(1.7)
A 		22.5
(0.6)
A 		8.3
(-3)
A 		31.7
(2.9)
A 		9
(-2.8)
A 		32
(3)
A 		24
B 8.4
(-3)
A 		12
(-2.5)
A 		13.4
(-2.3)
A 		39.1
(1.4)
A 		29.1
(-0)
A 		50.2
(3)
A 		42
C 10
(-2.2)
A 		30.4
(1.6)
A 		27.1
(1)
A 		7.9
(-2.6)
A 		5.7
(-3)
A 		38
(3)
A 		32
avr 15
(-2.9) 		21.6
(-1.4) 		16.3
(-2.6) 		26.2
(-0.3) 		14.6
(-3) 		40.1
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.9
(-1.6)
A 		12.2
(2.9)
A 		6.6
(-3)
A 		12.3
(3)
A 		6
B 10
(3)
A 		1.7
(-3)
A 		9.4
(2.6)
A 		9.9
(2.9)
A 		8
C 3.3
(-2.8)
A 		2.7
(-3)
A 		3.5
(-2.7)
A 		21
(3)
A 		18
avr 7.1
(-1.9) 		5.5
(-3) 		6.5
(-2.3) 		14.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.9
(0)
A 		8
(3)
A 		1.8
(-3)
A 		8
(3)
A 		2.7
(-2.1)
A 		7.8
(2.8)
A 		6
B 2.9
(-3)
A 		4
(-2.6)
A 		3.3
(-2.8)
A 		10.3
(-0.2)
A 		11.8
(0.4)
A 		18.7
(3)
A 		16
C 3.7
(-1.9)
A 		9.3
(1.2)
A 		6.9
(-0.1)
A 		1.6
(-3)
A 		1.9
(-2.8)
A 		12.7
(3)
A 		11
avr 3.8
(-3) 		7.1
(-0.9) 		4
(-2.9) 		6.6
(-1.2) 		5.5
(-1.9) 		13.1
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17687
Sequence Type Exemplar sequence
Representative Public ID C30E1.3 NCBI
Target Description C30E1.3 /REP_DB=WormBase Gene ID /WP=CE08470 /TR=O17335 /GB=AAB71248.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078339 NCBI Caenorhabditis elegans C30E1.3 (C30E1.3) mRNA, complete cds. 11/11 None
C30E1.3 ENSEMBL cdna:known chromosome:CEL140:X:16925906:16926734:1 gene:C30E1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041129 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16925905-16926734(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.3
Entrez Gene 183046 Entrez gene
SwissProt O17335 EMBL-EBI
WormBase CE08470 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71248 Hypothetical protein C30E1.3 [Caenorhabditis elegans] ref|NP_510740.1| C30E1.3 [Caenorhabditis elegans] 1.0E-130
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 2.0E-58
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510740.1 3 69-91,117-139,165-182
C30E1.3 3 69-91,117-139,165-182
Sequence
Target Sequence 
>C. ELEGANS:184154_AT
aaagtatggttgtttgagcctccctccatggtagtcagtcataacgaatatcaaaaacaa
ggacttgtaaaggattctaagtatttcaattttttgttttttcaagtgtttggattcgtc
ttgcctgcaggaataacattattcgttagtagacagcaaaatcggaacaatttagacgtc
tgttatcttaattatttatgcagtctagatgttttcggattcaacgcattcaattcaatg
accagctccagtagtattgcagttatcggaattctaaatttgataattgtatttcgaaag
aaaatctttcgatatcaagttccaaggtttccaacttcacatggcgttcaaaagagacaa
gcaccaaaagtcgttttcctgttggggctttgtgcagtgggaatttggtcaattgttaca
gtgaactgcccacgaagttatacatatcacctcagtaagtatttctatccaaattgtcaa
aacaacgtattccgtatgtgttcatatacaaaaagttcattccatatacaattttataat
tcattaccgagtcaatgtgcagccgacatcgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTATGGTTGTTTGAGCCTCCCT 564 119 136 Antisense
CTCCCTCCATGGTAGTCAGTCATAA 103 235 155 Antisense
TGGATTCGTCTTGCCTGCAGGAATA 524 547 246 Antisense
GATGTTTTCGGATTCAACGCATTCA 675 409 343 Antisense
GACCAGCTCCAGTAGTATTGCAGTT 62 385 375 Antisense
GGTTTCCAACTTCACATGGCGTTCA 122 505 461 Antisense
AGCACCAAAAGTCGTTTTCCTGTTG 82 69 495 Antisense
GTTGGGGCTTTGTGCAGTGGGAATT 371 437 516 Antisense
ATCACCTCAGTAAGTATTTCTATCC 356 29 581 Antisense
ACAACGTATTCCGTATGTGTTCATA 451 113 617 Antisense
AGTCAATGTGCAGCCGACATCGTAC 206 61 685 Antisense
Sequence Source Affymetrix Proprietary Database