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[184153_at]

Description F15H10.6 /REP_DB=WormBase Gene ID /WP=CE05643 /TR=Q19485 /GB=CAA98259.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.3
(-2.3)
A 		1.1
(-3)
A 		10.8
(3)
A 		4.2
(-1.1)
A 		10
B 2.1
(-2.7)
A 		1.1
(-3)
A 		25
(3)
A 		1.7
(-2.8)
A 		24
C 3.6
(2.5)
A 		3.9
(3)
A 		0.6
(-3)
A 		1.4
(-1.5)
A 		3
avr 2.7
(-2.6) 		2
(-3) 		12.1
(3) 		2.4
(-2.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 25.9
(3)
A 		2.7
(-2.7)
A 		14
(0.1)
A 		24.3
(2.6)
A 		12.2
(-0.3)
A 		1.3
(-3)
A 		25
B 33.7
(3)
A 		10.6
(-1.4)
A 		11.6
(-1.2)
A 		19.4
(0.3)
A 		10.7
(-1.4)
A 		2
(-3)
A 		32
C 1.9
(-3)
A 		28.9
(3)
A 		21.7
(1.4)
A 		23.1
(1.7)
A 		4.7
(-2.4)
A 		2.2
(-2.9)
A 		27
avr 20.5
(2.5) 		14.1
(0.6) 		15.8
(1.1) 		22.3
(3) 		9.2
(-0.8) 		1.8
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(-1.6)
A 		0.2
(-3)
A 		2.8
(3)
A 		0.6
(-2.1)
A 		3
B 0.7
(-2.6)
A 		0.3
(-3)
A 		5.8
(3)
A 		0.4
(-2.9)
A 		6
C 1.2
(3)
A 		1.1
(2.4)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
avr 0.9
(-1.8) 		0.5
(-2.8) 		2.9
(3) 		0.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.8
(1.6)
A 		1
(-2.3)
A 		3
(-0.3)
A 		6.2
(3)
A 		3.7
(0.5)
A 		0.3
(-3)
A 		6
B 11.7
(3)
A 		3.5
(-1.5)
A 		2.8
(-1.9)
A 		5.1
(-0.6)
A 		4.3
(-1.1)
A 		0.8
(-3)
A 		11
C 0.7
(-3)
A 		8.8
(3)
A 		5.5
(0.6)
A 		4.6
(-0.1)
A 		1.5
(-2.4)
A 		0.7
(-3)
A 		8
avr 5.7
(3) 		4.4
(1.5) 		3.8
(0.8) 		5.3
(2.5) 		3.2
(0.1) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11308
Sequence Type Exemplar sequence
Representative Public ID F15H10.6 NCBI
Target Description F15H10.6 /REP_DB=WormBase Gene ID /WP=CE05643 /TR=Q19485 /GB=CAA98259.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073274 NCBI Caenorhabditis elegans F15H10.6 (F15H10.6) mRNA, complete cds. 11/11 None
SNAP00000002812 ENSEMBL cdna:SNAP chromosome:CEL140:V:10412822:10414749:-1 11/11 None
GENEFINDER00000002827 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10412822:10414698:-1 11/11 None
F15H10.6 ENSEMBL cdna:known chromosome:CEL140:V:10412822:10414731:-1 gene:F15H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10412821-10414731(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15H10.6
Entrez Gene 184554 Entrez gene
SwissProt Q19485 EMBL-EBI
WormBase CE05643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98259 Hypothetical protein F15H10.6 [Caenorhabditis elegans] ref|NP_505675.1| F15H10.6 [Caenorhabditis elegans] 1.0E-163
blast CAA98259 Hypothetical protein F15H10.6 [Caenorhabditis elegans] ref|NP_505675.1| F15H10.6 [Caenorhabditis elegans] 1.0E-153
blast CAE64820 Hypothetical protein CBG09614 [Caenorhabditis briggsae] 3.0E-71
blast CAE64820 Hypothetical protein CBG09614 [Caenorhabditis briggsae] 4.0E-71
blast CAE64820 Hypothetical protein CBG09614 [Caenorhabditis briggsae] 1.0E-66
blast CAI46601 Hypothetical protein F15H10.9 [Caenorhabditis elegans] ref|NP_001023807.1| F15H10.9 [Caenorhabditis elegans] 6.0E-56
blast CAI46601 Hypothetical protein F15H10.9 [Caenorhabditis elegans] ref|NP_001023807.1| F15H10.9 [Caenorhabditis elegans] 4.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505675.1 1 5-24
F15H10.6 1 5-24
SNAP00000002812 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184153_AT
tcgacttgccaaatatttccataatttctacgaaagaagcaaaaaaacgctaagtccgga
actcttgaaaggaattgccaaagcaatggaaaaactagaacatgtaaaaactccgatgga
aaaaacaaagtcattgattggaaaattctttaatgaaatgtggaaggatgtgggcaaatt
gagagaagaagtaaaatacgatcatcttgaggagctactagaacaaacccttcgaacaag
tcttcaacttttgatacgaaatgaagaactctcagaaatcattctcaaccatccaattat
tttatctaaaattaaacgacgaattccaattgacaactccaaacttctatcgatcataac
tgttaaagaagtattttgtcacccattttatcgagattcaaaagttgcgatttttctcaa
gctgaaaattccaaaagtgaagaaagtgaaaattgaaaaacaacatatcaccaaaaaaag
cgatgtcgagtattccggattcacagacccatatcaattgtaccatgtagttccacaatc
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACTTGCCAAATATTTCCATAAT 696 601 312 Antisense
ACGCTAAGTCCGGAACTCTTGAAAG 681 79 358 Antisense
AATACGATCATCTTGAGGAGCTACT 461 171 506 Antisense
GGAGCTACTAGAACAAACCCTTCGA 416 519 522 Antisense
GAACTCTCAGAAATCATTCTCAACC 471 349 577 Antisense
GACAACTCCAAACTTCTATCGATCA 439 365 643 Antisense
GTATTTTGTCACCCATTTTATCGAG 517 453 682 Antisense
GCGATGTCGAGTATTCCGGATTCAC 314 289 791 Antisense
TATTCCGGATTCACAGACCCATATC 612 663 802 Antisense
CAGACCCATATCAATTGTACCATGT 528 205 815 Antisense
TGTACCATGTAGTTCCACAATCAAA 623 559 830 Antisense
Sequence Source Affymetrix Proprietary Database