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[184152_at]

Description ZK697.1 /REP_DB=WormBase Gene ID /WP=CE15395 /TR=O44580 /GB=AAC48249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 27.6
(-0.2)
A 		3
(-3)
A 		4
(-2.9)
A 		56.1
(3)
A 		53
B 19.6
(-0.9)
A 		33.3
(3)
A 		12
(-3)
A 		21.8
(-0.2)
A 		21
C 14
(-2.3)
A 		4.8
(-3)
A 		11.6
(-2.5)
A 		86.4
(3)
P 		82
avr 20.4
(-1.5) 		13.7
(-2.4) 		9.2
(-3) 		54.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.6
(-3)
A 		22.7
(-0.5)
A 		48.1
(3)
P 		25.9
(-0.1)
A 		5.8
(-2.8)
A 		4.5
(-3)
A 		44
B 23.4
(-0.8)
A 		41
(2.4)
M 		25.6
(-0.4)
A 		44.6
(3)
A 		11
(-3)
A 		20.3
(-1.3)
A 		34
C 26.1
(-0.9)
A 		61.6
(3)
M 		7
(-3)
A 		29
(-0.6)
A 		13.1
(-2.3)
A 		10.8
(-2.6)
A 		55
avr 18
(-1.5) 		41.8
(3) 		26.9
(0.2) 		33.2
(1.4) 		10
(-3) 		11.9
(-2.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10
(3)
A 		0.6
(-3)
A 		1
(-2.7)
A 		8.2
(1.9)
A 		9
B 6.3
(0.9)
A 		8.2
(3)
A 		2.8
(-3)
A 		4.6
(-1)
A 		5
C 4.6
(-1.5)
A 		1.4
(-3)
A 		4
(-1.8)
A 		14.6
(3)
P 		13
avr 7
(1.1) 		3.4
(-2.3) 		2.6
(-3) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		8.1
(1.5)
A 		10.5
(3)
P 		6.6
(0.6)
A 		1.8
(-2.4)
A 		1.1
(-2.8)
A 		10
B 8.1
(-0.6)
A 		13.6
(3)
M 		6.2
(-1.9)
A 		11.8
(1.8)
A 		4.5
(-3)
A 		7.6
(-1)
A 		9
C 9.7
(-0.2)
A 		18.8
(3)
M 		1.8
(-3)
A 		5.8
(-1.6)
A 		4.3
(-2.1)
A 		3.6
(-2.4)
A 		17
avr 6.2
(-1.4) 		13.5
(3) 		6.2
(-1.4) 		8.1
(-0.2) 		3.5
(-3) 		4.1
(-2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15790
Sequence Type Exemplar sequence
Representative Public ID ZK697.1 NCBI
Target Description ZK697.1 /REP_DB=WormBase Gene ID /WP=CE15395 /TR=O44580 /GB=AAC48249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071097 NCBI Caenorhabditis elegans ZK697.1 (ZK697.1) mRNA, complete cds. 11/11 None
ZK697.1 ENSEMBL cdna:known chromosome:CEL140:V:1752177:1753685:1 gene:ZK697.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1752176-1753685(+) 85.36 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK697.1
Entrez Gene 191408 Entrez gene
SwissProt O44580 EMBL-EBI
WormBase CE15395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48249 Hypothetical protein ZK697.1 [Caenorhabditis elegans] ref|NP_503498.1| ZK697.1 [Caenorhabditis elegans] 0.0
blast CAB05673 Hypothetical protein C08F11.2 [Caenorhabditis elegans] ref|NP_502628.1| C08F11.2 [Caenorhabditis elegans] 2.0E-29
blast CAA21002 Hypothetical protein Y38H6C.21 [Caenorhabditis elegans] ref|NP_507964.1| Y38H6C.21 [Caenorhabditis elegans] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503498.1 8 37-59,79-101,122-144,159-181,201-220,235-257,270-292,307-329
ZK697.1 8 37-59,79-101,122-144,159-181,201-220,235-257,270-292,307-329
Sequence
Target Sequence 
>C. ELEGANS:184152_AT
gtaattattctcttgcagcgatgcttactatcgcactgttcatttatatttctatcggtt
tcgttttcggatgcatcatatcgtttacttttctggctactatgcagcgtattttaattc
ttcactttgcgcaatcacaactgaacatcgcaatatttgtagtttattgttcaatggcgt
cttactcagttattaattacaacttttatcttcaaaaagagtcattattgaaaactgatc
tcacagtggagatgtggcataacttgttcaatggaatgctactattgatgactttcatca
caggatgcttttattactatatacgtggtcttatgcaaagattaacgccggaaatgggca
tttcgattggctatcttttgcaacaatttggtccaatttacagtgtgcaagttatttaca
ttttggcctcaattattgagacgatactttataaatttgatatttgtcagcctatttctt
taattgtttcattaactcttgtgcatacaatacccacaattgtttctttatcgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTATTCTCTTGCAGCGATGCT 395 463 461 Antisense
GCTTACTATCGCACTGTTCATTTAT 372 305 483 Antisense
ATCGGTTTCGTTTTCGGATGCATCA 334 35 514 Antisense
GCATCATATCGTTTACTTTTCTGGC 112 307 533 Antisense
ACTTTTCTGGCTACTATGCAGCGTA 250 103 547 Antisense
TTAATTCTTCACTTTGCGCAATCAC 49 685 574 Antisense
GTTCAATGGCGTCTTACTCAGTTAT 632 445 629 Antisense
GGGCATTTCGATTGGCTATCTTTTG 255 493 816 Antisense
GTCAGCCTATTTCTTTAATTGTTTC 171 465 926 Antisense
GTTTCATTAACTCTTGTGCATACAA 426 449 946 Antisense
ACCCACAATTGTTTCTTTATCGTAT 55 91 972 Antisense
Sequence Source Affymetrix Proprietary Database