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[184151_at]

Description F26A1.9 /REP_DB=WormBase Gene ID /WP=CE02690 /TR=Q19797 /GB=AAA68249.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 11.2
(-2.8)
A 		88.5
(0.6)
A 		141.9
(3)
P 		6.4
(-3)
A 		136
B 14.8
(-3)
A 		110.8
(2.3)
A 		123.4
(3)
A 		48.4
(-1.1)
A 		109
C 7.4
(-3)
A 		80.6
(0.1)
A 		151.2
(3)
P 		67
(-0.5)
A 		144
avr 11.1
(-3) 		93.3
(0.9) 		138.8
(3) 		40.6
(-1.6) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 19.2
(-3)
A 		48.3
(-1.6)
A 		109.7
(1.4)
A 		141.7
(3)
P 		123.3
(2.1)
A 		44.3
(-1.8)
A 		123
B 43.2
(-2.5)
A 		107.4
(1.4)
A 		83
(-0.1)
A 		134.9
(3)
A 		95.3
(0.6)
A 		34.9
(-3)
A 		100
C 25
(-2.4)
A 		120.5
(2.3)
A 		82
(0.4)
A 		119.2
(2.2)
A 		134.4
(3)
A 		13.5
(-3)
A 		121
avr 29.1
(-3) 		92.1
(0.7) 		91.6
(0.6) 		131.9
(3) 		117.7
(2.2) 		30.9
(-2.9) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.1
(-2.5)
A 		19.2
(0)
A 		37.1
(3)
P 		0.9
(-3)
A 		36
B 4.7
(-3)
A 		27.4
(2.7)
A 		28.6
(3)
A 		10.3
(-1.6)
A 		24
C 2.4
(-3)
A 		23.2
(-0.5)
A 		52.7
(3)
P 		11.3
(-1.9)
A 		50
avr 3.7
(-3) 		23.3
(0.3) 		39.5
(3) 		7.5
(-2.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 3.5
(-3)
A 		17.2
(-0.6)
A 		23.9
(0.6)
A 		35.9
(2.8)
P 		37.2
(3)
A 		10.8
(-1.7)
A 		34
B 15
(-2.5)
A 		35.7
(2.3)
A 		20.2
(-1.3)
A 		35.7
(2.3)
A 		38.7
(3)
A 		13
(-3)
A 		26
C 9.3
(-2.3)
A 		36.8
(2)
A 		20.9
(-0.5)
A 		24
(0)
A 		43.5
(3)
A 		4.5
(-3)
A 		39
avr 9.3
(-3) 		29.9
(1.1) 		21.7
(-0.6) 		31.9
(1.4) 		39.8
(3) 		9.4
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7549
Sequence Type Exemplar sequence
Representative Public ID F26A1.9 NCBI
Target Description F26A1.9 /REP_DB=WormBase Gene ID /WP=CE02690 /TR=Q19797 /GB=AAA68249.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065597(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065597 NCBI Caenorhabditis elegans F26A1.9 (F26A1.9) mRNA, complete cds. 9/11 None
SNAP00000001869 ENSEMBL cdna:SNAP chromosome:CEL140:III:4825420:4829219:-1 10/11 None
GENEFINDER00000001889 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4825420:4826382:-1 11/11 None
F26A1.9 ENSEMBL cdna:known chromosome:CEL140:III:4825420:4826201:-1 gene:F26A1.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4825419-4826222(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.9
Entrez Gene 184949 Entrez gene
SwissProt Q19797 EMBL-EBI
WormBase CE29287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE71121 Hypothetical protein CBG17974 [Caenorhabditis briggsae] 6.0E-83
blast CAE71121 Hypothetical protein CBG17974 [Caenorhabditis briggsae] 3.0E-82
blast NP_497998 F26A1.9 [Caenorhabditis elegans] gb|AAA68249.2| Hypothetical protein F26A1.9 [Caenorhabditis elegans] 2.0E-31
blast NP_497998 F26A1.9 [Caenorhabditis elegans] gb|AAA68249.2| Hypothetical protein F26A1.9 [Caenorhabditis elegans] 6.0E-31
blast NP_497998 F26A1.9 [Caenorhabditis elegans] gb|AAA68249.2| Hypothetical protein F26A1.9 [Caenorhabditis elegans] 9.0E-31
blast CAE71121 Hypothetical protein CBG17974 [Caenorhabditis briggsae] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:184151_AT
ggctatgaaactgcacgatggtgtcagaatgcattaccggtgtcttcatttatacaattt
gccccaagtgatatgtgatccattttctacaagatttgactggtacagatgtatgaagtt
cctgttcgattgtgaactaatctccgattgggatgatgatgattacgatgatactggagt
tatcacagaagatggtgctgctcctccaagaccacctccacaaatttcaaagccgaaacc
atcacttcccgagtcttcaatatctgatcaagctgaaacacttttgaaaggtggactctc
ttctaaacagctcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATGAAACTGCACGATGGTGTC 629 537 15 Antisense
GTCAGAATGCATTACCGGTGTCTTC 408 465 37 Antisense
GTCTTCATTTATACAATTTGCCCCA 198 469 56 Antisense
ATTTGCCCCAAGTGATATGTGATCC 669 17 71 Antisense
GTATGAAGTTCCTGTTCGATTGTGA 324 455 125 Antisense
GATTGTGAACTAATCTCCGATTGGG 473 435 142 Antisense
TCACAGAAGATGGTGCTGCTCCTCC 13 629 197 Antisense
GACCACCTCCACAAATTTCAAAGCC 60 383 224 Antisense
TTTCAAAGCCGAAACCATCACTTCC 518 667 239 Antisense
GAGTCTTCAATATCTGATCAAGCTG 654 397 265 Antisense
TGGACTCTCTTCTAAACAGCTCAAG 168 549 306 Antisense
Sequence Source Affymetrix Proprietary Database