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[184149_at]

Description C12D5.3 /REP_DB=WormBase Gene ID /WP=CE06805 /TR=Q17927 /GB=AAA98570.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 54      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 273.4
(3)
P 		186.3
(0.3)
A 		165.5
(-0.3)
A 		77.2
(-3)
A 		196
B 299.6
(3)
P 		137
(-1.3)
A 		83.9
(-2.7)
A 		70.9
(-3)
A 		229
C 268.8
(3)
P 		143
(-0.1)
A 		171.6
(0.6)
A 		28.6
(-3)
A 		240
avr 280.6
(3) 		155.4
(-0.4) 		140.3
(-0.8) 		58.9
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 23.2
(-3)
A 		304.1
(1.3)
P 		418.5
(3)
P 		409.3
(2.9)
P 		342.2
(1.8)
P 		350.7
(2)
P 		395
B 56
(-3)
A 		330.2
(0.2)
P 		566.9
(3)
P 		416.5
(1.2)
P 		391.5
(0.9)
P 		314.5
(0)
P 		511
C 73.5
(-3)
A 		386.6
(1.2)
P 		523.3
(3)
P 		442.7
(1.9)
P 		338.4
(0.5)
P 		319.6
(0.3)
P 		450
avr 50.9
(-3) 		340.3
(0.8) 		502.9
(3) 		422.8
(1.9) 		357.4
(1.1) 		328.3
(0.7) 		452
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 99.5
(3)
P 		40.4
(-1)
A 		43.3
(-0.8)
A 		11.3
(-3)
A 		88
B 95.5
(3)
P 		33.8
(-1.6)
A 		19.4
(-2.7)
A 		15.1
(-3)
A 		80
C 89
(3)
P 		41.1
(-0.4)
A 		59.8
(0.9)
A 		4.8
(-3)
A 		84
avr 94.7
(3) 		38.4
(-1) 		40.8
(-0.8) 		10.4
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 4.3
(-3)
A 		108.2
(3)
P 		91.1
(2)
P 		103.8
(2.7)
P 		103.3
(2.7)
P 		85.4
(1.7)
P 		104
B 19.5
(-3)
A 		109.9
(0.9)
P 		137.7
(2.1)
P 		110.3
(0.9)
P 		159.1
(3)
P 		117.3
(1.2)
P 		140
C 27.2
(-3)
A 		118
(2.1)
P 		133.2
(3)
P 		89
(0.5)
P 		109.5
(1.7)
P 		107
(1.5)
P 		106
avr 17
(-3) 		112
(2.3) 		120.7
(2.8) 		101
(1.7) 		124
(3) 		103.2
(1.8) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11798
Sequence Type Exemplar sequence
Representative Public ID C12D5.3 NCBI
Target Description C12D5.3 /REP_DB=WormBase Gene ID /WP=CE06805 /TR=Q17927 /GB=AAA98570.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072586 NCBI Caenorhabditis elegans C12D5.3 (C12D5.3) mRNA, complete cds. 11/11 None
SNAP00000021440 ENSEMBL cdna:SNAP chromosome:CEL140:V:7678936:7679377:1 11/11 None
GENEFINDER00000021456 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7678936:7679377:1 11/11 None
C12D5.3 ENSEMBL cdna:known chromosome:CEL140:V:7678896:7679538:1 gene:C12D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7678936-7679378(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D5.3
Entrez Gene 182534 Entrez gene
SwissProt Q17927 EMBL-EBI
WormBase CE06805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98570 Hypothetical protein C12D5.3 [Caenorhabditis elegans] ref|NP_504987.1| C12D5.3 [Caenorhabditis elegans] 5.0E-61
blast AAC64978 Hypothetical protein B0294.1 [Caenorhabditis elegans] ref|NP_508348.1| B0294.1 [Caenorhabditis elegans] 1.0E-37
blast H89471 protein B0294.2 [imported] - Caenorhabditis elegans 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:184149_AT
aaaaaccgctattgtcttgcttgccgcaatcatcgcttcctctgacgccatcgagtgcta
tcagcagaacgtcggaaccccaaaagccaggatcattgataacatgatttcctgtttttc
aatgtactactccagcgagcggattgcgtcgtttggtggaatcagcaacaacttcaagaa
tgcacccagaaaacaagagctcgcccttgcagatggaacatgtcatcgagttgaaaagac
cgcattggacaatacccgctcagtgcattatgccgatacggtgatctgttattgtaacaa
acccttgtgcaatatgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAACCGCTATTGTCTTGCTTGCC 613 129 24 Antisense
TCTGACGCCATCGAGTGCTATCAGC 357 609 64 Antisense
GCTATCAGCAGAACGTCGGAACCCC 254 303 80 Antisense
GTCGGAACCCCAAAAGCCAGGATCA 488 377 94 Antisense
TCCTGTTTTTCAATGTACTACTCCA 512 593 133 Antisense
ACTACTCCAGCGAGCGGATTGCGTC 635 101 149 Antisense
CTCGCCCTTGCAGATGGAACATGTC 255 233 223 Antisense
AAGACCGCATTGGACAATACCCGCT 4 153 259 Antisense
ACCCGCTCAGTGCATTATGCCGATA 294 89 277 Antisense
ATGCCGATACGGTGATCTGTTATTG 666 41 293 Antisense
AACAAACCCTTGTGCAATATGCCAA 399 135 319 Antisense
Sequence Source Affymetrix Proprietary Database