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[184148_at]

Description Y8A9A.3 /REP_DB=WormBase Gene ID /WP=CE21337 /TR=Q9TYK6 /GB=AAK18994.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.1
(-3)
A 		4.3
(-2.6)
A 		5.9
(-2.2)
A 		22.9
(3)
A 		20
B 3.5
(-2.3)
A 		4.3
(3)
A 		3.4
(-3)
A 		3.4
(-3)
A 		1
C 3.2
(-2.8)
A 		5.5
(-1.6)
A 		2.9
(-3)
A 		13.7
(3)
A 		11
avr 3.3
(-3) 		4.7
(-2.2) 		4.1
(-2.5) 		13.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.6
(-1.8)
A 		4
(-2.8)
A 		4
(-2.8)
A 		5
(-1.2)
A 		7.5
(3)
A 		3.9
(-3)
A 		4
B 3.5
(-2.4)
A 		5.4
(-0.1)
A 		6.5
(1.2)
A 		8
(3)
A 		3
(-3)
A 		3.1
(-2.9)
A 		5
C 3.9
(-1)
A 		4.1
(-0.8)
A 		7.2
(3)
A 		3.3
(-1.8)
A 		3.3
(-1.8)
A 		2.3
(-3)
A 		5
avr 4
(-1.1) 		4.5
(-0) 		5.9
(3) 		5.4
(1.9) 		4.6
(0.2) 		3.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-2.5)
A 		0.9
(-3)
A 		1.5
(-1.5)
A 		3.3
(3)
A 		2
B 1.1
(3)
A 		1.1
(3)
A 		0.8
(-1.5)
A 		0.7
(-3)
A 		0
C 1.1
(-2.5)
A 		1.6
(-0.2)
A 		1
(-3)
A 		2.3
(3)
A 		1
avr 1.1
(-3) 		1.2
(-2.4) 		1.1
(-3) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.4
(-0.6)
A 		0.9
(-2.6)
A 		1.3
(-1)
A 		2.3
(3)
A 		1
(-2.2)
A 		2
B 1.2
(-3)
A 		1.8
(1)
A 		1.6
(-0.3)
A 		2.1
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1
C 1.4
(0.8)
A 		1.3
(0.3)
A 		1.8
(3)
A 		0.7
(-3)
A 		1.1
(-0.8)
A 		0.8
(-2.5)
A 		1
avr 1.1
(-1.8) 		1.5
(3) 		1.4
(1.8) 		1.4
(1.8) 		1.5
(3) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4932
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.3 NCBI
Target Description Y8A9A.3 /REP_DB=WormBase Gene ID /WP=CE21337 /TR=Q9TYK6 /GB=AAK18994.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062251 NCBI Caenorhabditis elegans Y8A9A.3 (Y8A9A.3) mRNA, complete cds. 11/11 None
SNAP00000029988 ENSEMBL cdna:SNAP chromosome:CEL140:II:3790721:3792096:1 11/11 None
GENEFINDER00000029993 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3790721:3792096:1 11/11 None
Y8A9A.3 ENSEMBL cdna:known chromosome:CEL140:II:3791528:3792096:1 gene:Y8A9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3791526-3792095(+) 78.2 100.0
Public Domain and Genome References
Gene Title
Ensembl Y8A9A.3
Entrez Gene 189400 Entrez gene
SwissProt Q9TYK6 EMBL-EBI
WormBase CE21337 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 2.0E-55
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 6.0E-55
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 8.0E-55
blast AAK18993 Hypothetical protein Y8A9A.4 [Caenorhabditis elegans] ref|NP_494651.2| Y8A9A.4 [Caenorhabditis elegans] 9.0E-40
blast AAB95039 Hypothetical protein T24E12.1 [Caenorhabditis elegans] ref|NP_494650.1| T24E12.1 [Caenorhabditis elegans] 1.0E-9
blast AAB95040 Hypothetical protein T24E12.2 [Caenorhabditis elegans] ref|NP_494649.1| T24E12.2 [Caenorhabditis elegans] 3.0E-9
blast AAB95039 Hypothetical protein T24E12.1 [Caenorhabditis elegans] ref|NP_494650.1| T24E12.1 [Caenorhabditis elegans] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184148_AT
gatagcgatgcttacaaggccgatgaaaaagaagaagaaaaagctgaagaagtggagctc
gacgactccgacgttgaatcggaagaagaatcagaagacgaagaatcagatgaagaccca
gaagatggcccagctccacgtagatttgagacattcgatgatgccaagcagttctgggct
gaacacttcgaagaagagctgattccgaatgaggatctggacctcaactgctacctcttc
aaccccaacggtgagccagtggttccacagccggtgaagcgcgcgatgaaccctcgttcc
ctcttcaacaaccagaggcctgttcaggtgtaccatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGCGATGCTTACAAGGCCGATG 160 425 25 Antisense
AGAAGTGGAGCTCGACGACTCCGAC 227 75 72 Antisense
CTCGACGACTCCGACGTTGAATCGG 402 231 82 Antisense
GAAGACCCAGAAGATGGCCCAGCTC 621 339 136 Antisense
GCCCAGCTCCACGTAGATTTGAGAC 101 287 152 Antisense
GAGACATTCGATGATGCCAAGCAGT 310 393 172 Antisense
AGCAGTTCTGGGCTGAACACTTCGA 313 77 191 Antisense
GAGGATCTGGACCTCAACTGCTACC 534 401 235 Antisense
TCAACCCCAACGGTGAGCCAGTGGT 529 631 263 Antisense
GTTCCCTCTTCAACAACCAGAGGCC 340 441 320 Antisense
AGGCCTGTTCAGGTGTACCATCAAA 493 51 340 Antisense
Sequence Source Affymetrix Proprietary Database