[Home] | [Total List]

[184147_at]

Description F55F1.1 /REP_DB=WormBase Gene ID /WP=CE07277 /TR=Q20843 /GB=AAB00619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 66.7
(1.4)
A 		16.5
(-3)
A 		83.7
(2.9)
A 		84.7
(3)
A 		68
B 79.4
(1.8)
A 		22.3
(-3)
A 		93.2
(3)
A 		74.1
(1.4)
A 		71
C 75.3
(3)
A 		10.8
(-2.7)
A 		7.2
(-3)
A 		73.2
(2.8)
A 		68
avr 73.8
(2.7) 		16.5
(-3) 		61.4
(1.4) 		77.3
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 28.1
(-0.6)
A 		48.6
(1.7)
A 		60.1
(3)
A 		7.4
(-3)
A 		36.6
(0.3)
A 		47
(1.5)
A 		53
B 86.2
(3)
A 		69.4
(1.6)
A 		57.1
(0.5)
A 		16.3
(-3)
A 		62.9
(1)
A 		28.9
(-1.9)
A 		70
C 70.3
(2.5)
A 		76.7
(3)
A 		20.8
(-1.6)
A 		20.8
(-1.6)
A 		59.2
(1.6)
A 		3.8
(-3)
A 		73
avr 61.5
(2.6) 		64.9
(3) 		46
(0.7) 		14.8
(-3) 		52.9
(1.6) 		26.6
(-1.6) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.3
(3)
A 		3.6
(-3)
A 		21.9
(2.3)
A 		12.4
(-0.4)
A 		21
B 25.3
(3)
A 		5.5
(-3)
A 		21.6
(1.9)
A 		15.8
(0.1)
A 		20
C 24.9
(3)
A 		3.1
(-2.8)
A 		2.5
(-3)
A 		12.3
(-0.4)
A 		22
avr 24.8
(3) 		4.1
(-3) 		15.3
(0.2) 		13.5
(-0.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 5.2
(-1.7)
A 		17.3
(3)
A 		13.1
(1.4)
A 		1.9
(-3)
A 		11
(0.5)
A 		11.4
(0.7)
A 		15
B 30
(3)
A 		23.1
(1.4)
A 		13.9
(-0.8)
A 		4.3
(-3)
A 		25.6
(2)
A 		10.8
(-1.5)
A 		26
C 26.1
(3)
A 		23.4
(2.3)
A 		5.3
(-2)
A 		4.2
(-2.3)
A 		19.2
(1.3)
A 		1.3
(-3)
A 		25
avr 20.4
(2.7) 		21.3
(3) 		10.8
(-0.5) 		3.5
(-3) 		18.6
(2.1) 		7.8
(-1.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18065
Sequence Type Exemplar sequence
Representative Public ID F55F1.1 NCBI
Target Description F55F1.1 /REP_DB=WormBase Gene ID /WP=CE07277 /TR=Q20843 /GB=AAB00619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171640, NM_076083
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076083 NCBI Caenorhabditis elegans F55F1.1 (F55F1.1) mRNA, complete cds. None
NM_171640 NCBI Caenorhabditis elegans F55F1.3 (F55F1.3) mRNA, complete cds. None
F55F1.1 ENSEMBL cdna:known chromosome:CEL140:X:2778271:2779847:1 gene:F55F1.1 None
F55F1.3 ENSEMBL cdna:known chromosome:CEL140:X:2779985:2781666:1 gene:F55F1.3 None
SNAP00000003051 ENSEMBL cdna:SNAP chromosome:CEL140:X:2780464:2781666:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2778270-2782646(+) 93.15 100.0
Public Domain and Genome References
Gene Title

Ensembl F55F1.1
F55F1.3
Entrez Gene 186316 Entrez gene
3564959 Entrez gene
SwissProt Q20843 EMBL-EBI
Q8WQE9 EMBL-EBI
WormBase CE30147 Wormbase
CE30148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65789 Hypothetical protein F55F1.1 [Caenorhabditis elegans] ref|NP_508484.2| F55F1.1 [Caenorhabditis elegans] 4.0E-51
blast AAL65790 Hypothetical protein F55F1.3 [Caenorhabditis elegans] ref|NP_741735.1| F55F1.3 [Caenorhabditis elegans] 1.0E-50
blast CAE58836 Hypothetical protein CBG02048 [Caenorhabditis briggsae] 5.0E-46
blast AAL65790 Hypothetical protein F55F1.3 [Caenorhabditis elegans] ref|NP_741735.1| F55F1.3 [Caenorhabditis elegans] 1.0E-45
blast CAE58836 Hypothetical protein CBG02048 [Caenorhabditis briggsae] 5.0E-41
blast T30116 hypothetical protein F55F1.1 - Caenorhabditis elegans 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:184147_AT
gtgtgacgtttgttatcaagccggaaggcgttctacagcgtgctcttgaagttgggtatc
gtggagcagccgacacttgctcatttcaggtgatccaactcgaatcgtcggccgaacttc
ggaaatacattcatcacgagtttttgacaatggatgtcggtggccttatcaagtataacc
acttggaatgggtgcagcacagaatggacattgaacgaatgaaagcgtctgcaacagcca
tcgctgcttctcttaccgaattcggaaaaaccttgcgagaaactgaactacctaatgatg
cggacagtacagcacggatattggagcttcagactgccgaaaagatggctattaagaact
cttattctgaaattcggaccttttgggtcagtttttgtctcttcaaatacccaaaaatac
ccaaaaccctaccccctttcagatctaggactgttcaaccgtatctttacattatctttt
ttccagaagagacagagcgaagctttgattcattttggacaaaacacgaacgtcgcttga
gatattgccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGACGTTTGTTATCAAGCCGGA 369 487 44 Antisense
GCGTTCTACAGCGTGCTCTTGAAGT 409 291 71 Antisense
AGCCGACACTTGCTCATTTCAGGTG 655 81 111 Antisense
TCGAATCGTCGGCCGAACTTCGGAA 207 585 143 Antisense
ATGGATGTCGGTGGCCTTATCAAGT 536 51 193 Antisense
CTGCTTCTCTTACCGAATTCGGAAA 328 237 287 Antisense
GCACGGATATTGGAGCTTCAGACTG 35 317 355 Antisense
TTTTGGGTCAGTTTTTGTCTCTTCA 11 677 424 Antisense
CTACCCCCTTTCAGATCTAGGACTG 149 1 472 Antisense
AGGACTGTTCAACCGTATCTTTACA 264 55 490 Antisense
GAACGTCGCTTGAGATATTGCCTTG 50 349 571 Antisense
Sequence Source Affymetrix Proprietary Database