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[184146_s_at]

Description B0336.6 /REP_DB=WormBase Gene ID /WP=CE00774 /TR=Q10929 /GB=AAK18854.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 869.4
(2.7)
P 		575.8
(-3)
P 		644.6
(-1.7)
P 		886.5
(3)
P 		311
B 835.9
(0.8)
P 		651.6
(-3)
P 		690.7
(-2.2)
P 		945.7
(3)
P 		294
C 980.1
(3)
P 		553.9
(-3)
P 		897
(1.8)
P 		849.4
(1.2)
P 		426
avr 895.1
(3) 		593.8
(-3) 		744.1
(-0) 		893.9
(3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1002
1 2 3 4 5 6 range
A 885.2
(-1.6)
P 		811
(-2.1)
P 		677.1
(-3)
P 		818.2
(-2.1)
P 		1054
(-0.5)
P 		1588.4
(3)
P 		911
B 757
(-1.9)
P 		586
(-3)
P 		736.4
(-2)
P 		853
(-1.3)
P 		1013.3
(-0.3)
P 		1534.1
(3)
P 		948
C 723.3
(-2.5)
P 		653.2
(-3)
P 		881.6
(-1.5)
P 		801.7
(-2)
P 		968
(-0.9)
P 		1566.1
(3)
P 		913
avr 788.5
(-2.3) 		683.4
(-3) 		765
(-2.4) 		824.3
(-2) 		1011.8
(-0.8) 		1562.9
(3) 		880
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 316.6
(3)
P 		125
(-3)
P 		168.5
(-1.6)
P 		129.8
(-2.8)
P 		192
B 266.6
(3)
P 		160.9
(-2.9)
P 		160
(-3)
P 		201.5
(-0.7)
P 		107
C 324.4
(3)
P 		159.2
(-2.5)
P 		312.6
(2.6)
P 		143.2
(-3)
P 		181
avr 302.5
(3) 		148.4
(-3) 		213.7
(-0.5) 		158.2
(-2.6) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 425
1 2 3 4 5 6 range
A 163.2
(-2.6)
P 		288.4
(0.5)
P 		147.5
(-3)
P 		207.5
(-1.5)
P 		318.1
(1.3)
P 		386.7
(3)
P 		239
B 263.4
(-1.7)
P 		195.1
(-2.8)
P 		178.8
(-3)
P 		225.9
(-2.3)
P 		411.7
(0.6)
P 		572
(3)
P 		393
C 268.1
(-1.2)
P 		199.3
(-2.4)
P 		224.4
(-2)
P 		161.2
(-3)
P 		313.2
(-0.5)
P 		524.3
(3)
P 		363
avr 231.6
(-2.1) 		227.6
(-2.2) 		183.6
(-3) 		198.2
(-2.7) 		347.7
(0.2) 		494.3
(3) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184146_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7840
Sequence Type Exemplar sequence
Representative Public ID B0336.6 NCBI
Target Description B0336.6 /REP_DB=WormBase Gene ID /WP=CE00774 /TR=Q10929 /GB=AAK18854.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065823 NCBI Caenorhabditis elegans B0336.6 (B0336.6) mRNA, complete cds. 11/11 None
SNAP00000008870 ENSEMBL cdna:SNAP chromosome:CEL140:III:5690178:5692679:-1 11/11 None
GENEFINDER00000008887 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5690178:5692679:-1 11/11 None
B0336.6.2 ENSEMBL cdna:known chromosome:CEL140:III:5690056:5692691:-1 gene:B0336.6 11/11 None
B0336.6.1 ENSEMBL cdna:known chromosome:CEL140:III:5690056:5692679:-1 gene:B0336.6 11/11 None
B0336.6.3 ENSEMBL cdna:known chromosome:CEL140:III:5690178:5692689:-1 gene:B0336.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5690176-5692581(-) 97.41 100.0
Public Domain and Genome References
Gene Title
Ensembl B0336.6
Entrez Gene 175789 Entrez gene
SwissProt Q10929 EMBL-EBI
WormBase CE29545 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599493_AT similar to Abl-interactor 2 (Abelson interactor 2) (Abi-2) (Abl binding protein 3) (AblBP3) (Arg binding protein 1) (ArgBP1) cfa
CANINE_2:CFA.7090.1.S1_S_AT similar to Abl-interactor 2 (Abelson interactor 2) (Abi-2) (Abl binding protein 3) (AblBP3) (Arg binding protein 1) (ArgBP1) cfa
CANINE_2:CFAAFFX.19895.1.S1_AT similar to Abl-interactor 2 (Abelson interactor 2) (Abi-2) (Abl binding protein 3) (AblBP3) (Arg binding protein 1) (ArgBP1) cfa
CANINE_2:CFAAFFX.19895.1.S1_S_AT similar to Abl-interactor 2 (Abelson interactor 2) (Abi-2) (Abl binding protein 3) (AblBP3) (Arg binding protein 1) (ArgBP1) cfa
DROSOPHILA_2:1632196_AT Abelson Interacting Protein dm
DROSGENOME1:154787_AT Abelson Interacting Protein dm
CHICKEN:GGA.18327.1.A1_AT similar to Abl interactor 2 gga
CHICKEN:GGAAFFX.5486.1.S1_S_AT similar to Abl interactor 2 gga
HG-U133_PLUS_2:211793_S_AT abl interactor 2 hs
HG-FOCUS:211793_S_AT abl interactor 2 hs
HG-U133A:211793_S_AT abl interactor 2 hs
HG-U133A_2:211793_S_AT abl interactor 2 hs
HG-U95AV2:134_AT abl interactor 2 hs
HC-G110:134_AT abl interactor 2 hs
HG-U95AV2:1040_S_AT abl interactor 2 hs
HC-G110:1040_S_AT abl interactor 2 hs
HG-U95AV2:135_G_AT abl interactor 2 hs
HC-G110:135_G_AT abl interactor 2 hs
HG-U133_PLUS_2:207268_X_AT abl interactor 2 hs
HG-U133A:207268_X_AT abl interactor 2 hs
HG-U133A_2:207268_X_AT abl interactor 2 hs
HG-U133_PLUS_2:209856_X_AT abl interactor 2 hs
HG-U133A:209856_X_AT abl interactor 2 hs
HG-U133A_2:209856_X_AT abl interactor 2 hs
HU35KSUBA:X95632_S_AT abl interactor 2 hs
HUGENEFL:X95632_S_AT abl interactor 2 hs
HUGENEFL:X95677_AT abl interactor 2 hs
HUGENEFL:U23435_S_AT abl interactor 2 hs
U133_X3P:G7839523_3P_A_AT abl interactor 2 hs
U133_X3P:HS.302042.0.S1_3P_AT abl interactor 2 hs
HG-U95AV2:36448_AT abl interactor 2 hs
HG-U133_PLUS_2:216113_AT Abl interactor 2 hs
HG-U133A_2:216113_AT Abl interactor 2 hs
HG-U133A:216113_AT Abl interactor 2 hs
HU35KSUBA:W01587_S_AT Abl interactor 2 hs
HU35KSUBD:RC_AA227837_AT Abl interactor 2 hs
HU35KSUBD:RC_H95968_AT Abl interactor 2 hs
U133_X3P:HS.302042.0.S1_3P_X_AT Abl interactor 2 hs
U133_X3P:HS.285728.0.A2_3P_AT Abl interactor 2 hs
U133_X3P:HS.285728.0.A1_3P_AT Abl interactor 2 hs
U133_X3P:HS.256315.2.A1_3P_AT Abl interactor 2 hs
U133_X3P:216113_3P_AT Abl interactor 2 hs
HG-U133_PLUS_2:225098_AT Abl interactor 2 hs
HG-U133B:225098_AT Abl interactor 2 hs
HG-U133_PLUS_2:225112_AT Abl interactor 2 hs
HG-U133B:225112_AT Abl interactor 2 hs
HG-U133_PLUS_2:227631_AT Abl interactor 2 hs
HG-U133B:227631_AT Abl interactor 2 hs
HG-U95B:44746_AT Abl interactor 2 hs
HG-U95C:65721_AT Abl interactor 2 hs
HG-U95D:89772_R_AT Abl interactor 2 hs
HG-U95B:52796_AT Abl interactor 2 hs
MU11KSUBA:C79507_RC_F_AT abl-interactor 2 mm
MG-U74BV2:113766_AT abl-interactor 2 mm
MG-U74BV2:163592_AT abl-interactor 2 mm
MOE430B:1433985_AT abl-interactor 2 mm
MOUSE430_2:1433985_AT abl-interactor 2 mm
MOE430B:1436984_AT abl-interactor 2 mm
MOUSE430_2:1436984_AT abl-interactor 2 mm
MOE430B:1458053_AT abl-interactor 2 mm
MOUSE430_2:1458053_AT abl-interactor 2 mm
MG-U74BV2:105358_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MOUSE430_2:1444783_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MOE430B:1444783_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MOE430B:1460153_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MOUSE430_2:1460153_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MU19KSUBB:TC25972_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
MU19KSUBB:TC32773_AT Abl-interactor 2, mRNA (cDNA clone MGC:90836 IMAGE:6850720) mm
RG-U34A:U94904_S_AT hypothetical LOC301448 rn
RG-U34C:RC_AI145181_AT hypothetical LOC301448 rn
RAE230A:1387909_AT hypothetical LOC301448 rn
RAT230_2:1387909_AT hypothetical LOC301448 rn
Protein Similarities
Method ID Description E-Value
blast AAK18854 Hypothetical protein B0336.6 [Caenorhabditis elegans] ref|NP_498224.1| B0336.6 [Caenorhabditis elegans] 0.0
blast T15331 hypothetical protein B0336.6 - Caenorhabditis elegans 0.0
blast CAE64316 Hypothetical protein CBG08994 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 4.9E-22
Pfam IPR001452 EMBL-EBI SH3 4.9E-22
Sequence
Target Sequence 
>C. ELEGANS:184146_S_AT
gcttttctattcccagactatcatctgcacaaagtagtgctggaggtccagaatcaccaa
cattcccacttccaccaccagctatgaattatactggatatgttgcaccgggaagtgtgg
tacaacaacaacaacaacaacaaatgcaacaacaaaattatggaactattcgaaaatcaa
cggtgaaccgacatgatcttccacctccaccaaattctttgctcactggaatgtcaagtc
gaatgccaacacaagatgatatggatgatctaccacctccaccagaatcagttggtgggt
catcagcgtatggagtgtttgctggtagaacagaatcgtacagttcgagtcagccaccaa
gtctctttgatacgagtgctggatggatgcccaacgagtatttggaaaaagtacgggtcc
tgtacgactatgatgctgcaaaagaagacgagttgacacttcgcgagaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTTCTATTCCCAGACTATCATC 399 303 752 Antisense
GGAGGTCCAGAATCACCAACATTCC 644 515 793 Antisense
ACGGTGAACCGACATGATCTTCCAC 666 87 931 Antisense
CTCCACCAAATTCTTTGCTCACTGG 183 235 956 Antisense
GATATGGATGATCTACCACCTCCAC 486 425 1009 Antisense
GAATCAGTTGGTGGGTCATCAGCGT 435 327 1036 Antisense
ATCGTACAGTTCGAGTCAGCCACCA 112 35 1086 Antisense
TCAGCCACCAAGTCTCTTTGATACG 634 625 1101 Antisense
GAGTGCTGGATGGATGCCCAACGAG 368 399 1125 Antisense
GTCCTGTACGACTATGATGCTGCAA 21 477 1168 Antisense
ACGAGTTGACACTTCGCGAGAACGC 328 93 1199 Antisense
Sequence Source Affymetrix Proprietary Database